ppa006419m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa006419m T58372_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006419m RRM 49 115
ppa006419m RRM 134 204
ppa006419m RRM 255 321

Links

Other RRM family RBPs
Other Prunus persica RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000871411 Malus x domestica MDP0000871411 I 0.956
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.932
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.907
PK22818.1 Cannabis sativa PK22818.1 I 0.902
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.898
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.888
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.883
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.883
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.883
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.883
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.883
mgf001763m Mimulus guttatus mgf001763m I 0.883
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.879
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.879
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.879
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.879
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.879
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.879
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.879
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.879
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.879
29739.m003726 Ricinus communis 29739.m003726 I 0.878
29727.m000492 Ricinus communis 29727.m000492 I 0.874
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.869
PK20770.1 Cannabis sativa PK20770.1 I 0.864
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.864
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.859
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.855
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.854
ppa006170m Prunus persica ppa006170m I 0.854
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.850
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.850
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.850
mgf004534m Mimulus guttatus mgf004534m N 0.840
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.833
mgf015309m Mimulus guttatus mgf015309m N 0.831
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.825
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.820
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.816
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.816
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.810
MDP0000149711 Malus x domestica MDP0000149711 N 0.806
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.791
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.790
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.780
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.780
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.777
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.777
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.771
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.771
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.771
ppa006248m Prunus persica ppa006248m I 0.758
MDP0000147538 Malus x domestica MDP0000147538 N 0.758
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.757
28226.m000878 Ricinus communis 28226.m000878 I 0.749
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.744
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.741
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.739
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.734
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.732
SB07G027050 Sorghum bicolor Sb07g027050 N 0.732
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.729
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.729
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.727
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.727
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.720
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.720