Glyma13g17200.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma13g17200.1 T52826_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma13g17200.1 RRM 48 114
Glyma13g17200.1 RRM 133 203
Glyma13g17200.1 RRM 254 320

Links

Other RRM family RBPs
Other Glycine max RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.957
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.902
ppa006419m Prunus persica ppa006419m I 0.883
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.883
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.878
PK22818.1 Cannabis sativa PK22818.1 I 0.873
29739.m003726 Ricinus communis 29739.m003726 I 0.868
MDP0000871411 Malus x domestica MDP0000871411 I 0.868
mgf001763m Mimulus guttatus mgf001763m I 0.863
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.862
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.859
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.859
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.859
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.859
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.859
PK20770.1 Cannabis sativa PK20770.1 I 0.850
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.850
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.845
29727.m000492 Ricinus communis 29727.m000492 I 0.845
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.845
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.845
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.845
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.845
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.845
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.845
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.845
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.840
ppa006170m Prunus persica ppa006170m I 0.835
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.835
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.830
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.830
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.825
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.820
mgf004534m Mimulus guttatus mgf004534m N 0.816
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.816
mgf015309m Mimulus guttatus mgf015309m N 0.807
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.801
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.801
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.800
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.782
MDP0000149711 Malus x domestica MDP0000149711 N 0.782
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.782
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.780
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.772
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.766
ppa006248m Prunus persica ppa006248m I 0.763
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.761
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.756
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.756
28226.m000878 Ricinus communis 28226.m000878 I 0.754
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.752
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.752
SB07G027050 Sorghum bicolor Sb07g027050 N 0.751
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.751
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.749
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.748
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.744
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.741
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.741
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.739
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.737
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.727
MDP0000147538 Malus x domestica MDP0000147538 N 0.725
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.725
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.720
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.715