GSVIVG00015040001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00015040001 T44669_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00015040001 RRM 56 122
GSVIVT00015040001 RRM 141 211
GSVIVT00015040001 RRM 262 328

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000871411 Malus x domestica MDP0000871411 I 0.937
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.932
ppa006419m Prunus persica ppa006419m I 0.932
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.922
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.912
29739.m003726 Ricinus communis 29739.m003726 I 0.912
mgf001763m Mimulus guttatus mgf001763m I 0.912
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.903
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.903
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.903
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.903
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.902
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.898
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.898
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.898
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.898
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.898
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.898
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.898
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.898
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.898
PK22818.1 Cannabis sativa PK22818.1 I 0.888
PK20770.1 Cannabis sativa PK20770.1 I 0.883
29727.m000492 Ricinus communis 29727.m000492 I 0.883
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.879
ppa006170m Prunus persica ppa006170m I 0.879
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.874
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.874
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.874
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.869
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.865
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.864
mgf004534m Mimulus guttatus mgf004534m N 0.854
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.854
mgf015309m Mimulus guttatus mgf015309m N 0.845
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.840
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.838
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.835
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.834
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.834
MDP0000149711 Malus x domestica MDP0000149711 N 0.825
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.820
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.820
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.811
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.791
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.785
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.785
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.782
ppa006248m Prunus persica ppa006248m I 0.778
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.772
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.771
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.771
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.771
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.771
MDP0000147538 Malus x domestica MDP0000147538 N 0.768
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.763
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.761
SB07G027050 Sorghum bicolor Sb07g027050 N 0.761
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.761
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.761
28226.m000878 Ricinus communis 28226.m000878 I 0.758
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.754
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.749
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.744
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.739
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.729
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.715