ppa006170m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa006170m T58370_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.702
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006170m RRM 56 122
ppa006170m RRM 141 211
ppa006170m RRM 262 329

Links

Other RRM family RBPs
Other Prunus persica RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29727.m000492 Ricinus communis 29727.m000492 I 0.966
PK20770.1 Cannabis sativa PK20770.1 I 0.956
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.947
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.947
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.947
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.947
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.947
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.947
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.947
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.947
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.947
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.947
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.947
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.947
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.937
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.932
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.932
MDP0000149711 Malus x domestica MDP0000149711 N 0.932
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.932
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.932
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.922
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.913
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.903
mgf015309m Mimulus guttatus mgf015309m N 0.894
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.893
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.888
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.879
mgf004534m Mimulus guttatus mgf004534m N 0.879
MDP0000147538 Malus x domestica MDP0000147538 N 0.877
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.874
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.874
mgf001763m Mimulus guttatus mgf001763m I 0.874
MDP0000871411 Malus x domestica MDP0000871411 I 0.854
ppa006419m Prunus persica ppa006419m I 0.854
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.854
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.840
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.840
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.835
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.835
29739.m003726 Ricinus communis 29739.m003726 I 0.825
PK22818.1 Cannabis sativa PK22818.1 I 0.820
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.811
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.801
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.801
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.801
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.798
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.796
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.786
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.782
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.777
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.772
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.772
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.768
ppa006248m Prunus persica ppa006248m I 0.755
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.743
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.743
SB07G027050 Sorghum bicolor Sb07g027050 N 0.738
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.738
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.738
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.731
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.731
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.726
28226.m000878 Ricinus communis 28226.m000878 I 0.716
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.707
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.702
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.702