GSVIVG00016720001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00016720001 T44679_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00016720001 RRM 42 108
GSVIVT00016720001 RRM 127 197
GSVIVT00016720001 RRM 248 315

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.942
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.942
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.942
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.942
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.942
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.942
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.942
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.942
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.942
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.942
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.942
29727.m000492 Ricinus communis 29727.m000492 I 0.942
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.942
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.932
PK20770.1 Cannabis sativa PK20770.1 I 0.932
ppa006170m Prunus persica ppa006170m I 0.932
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.922
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.917
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.917
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.917
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.913
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.903
mgf015309m Mimulus guttatus mgf015309m N 0.889
mgf004534m Mimulus guttatus mgf004534m N 0.879
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.879
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.879
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.874
MDP0000149711 Malus x domestica MDP0000149711 N 0.874
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.869
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.869
mgf001763m Mimulus guttatus mgf001763m I 0.864
MDP0000871411 Malus x domestica MDP0000871411 I 0.859
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.850
ppa006419m Prunus persica ppa006419m I 0.850
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.845
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.845
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.840
29739.m003726 Ricinus communis 29739.m003726 I 0.835
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.830
MDP0000147538 Malus x domestica MDP0000147538 N 0.820
PK22818.1 Cannabis sativa PK22818.1 I 0.811
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.806
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.806
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.806
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.793
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.786
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.786
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.773
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.772
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.763
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.762
ppa006248m Prunus persica ppa006248m I 0.760
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.757
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.757
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.748
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.745
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.736
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.736
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.733
28226.m000878 Ricinus communis 28226.m000878 I 0.731
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.728
SB07G027050 Sorghum bicolor Sb07g027050 N 0.728
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.728
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.716
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.716