GSVIVG00035575001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00035575001 T44782_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.717
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00035575001 RRM 21 87
GSVIVT00035575001 RRM 106 176
GSVIVT00035575001 RRM 227 293

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006248m Prunus persica ppa006248m I 0.927
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.907
28226.m000878 Ricinus communis 28226.m000878 I 0.898
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.883
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.863
MDP0000201427 Malus x domestica MDP0000201427 N 0.795
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.760
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.760
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.760
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.760
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.754
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.745
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.744
MDP0000871411 Malus x domestica MDP0000871411 I 0.744
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.744
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.744
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.740
29727.m000492 Ricinus communis 29727.m000492 I 0.740
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.740
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.740
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.740
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.740
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.740
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.740
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.740
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.740
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.740
ppa006419m Prunus persica ppa006419m I 0.739
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.739
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.739
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.736
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.734
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.734
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.734
PK20770.1 Cannabis sativa PK20770.1 I 0.731
ppa006170m Prunus persica ppa006170m I 0.731
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.731
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.731
SB07G027050 Sorghum bicolor Sb07g027050 N 0.729
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.729
PK22818.1 Cannabis sativa PK22818.1 I 0.729
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.726
mgf001763m Mimulus guttatus mgf001763m I 0.725
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.722
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.721
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.720
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.720
29739.m003726 Ricinus communis 29739.m003726 I 0.720
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.717
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.717
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.716
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.716
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.716
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.710
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.707
mgf004534m Mimulus guttatus mgf004534m N 0.707
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.705
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.705
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.705
mgf015309m Mimulus guttatus mgf015309m N 0.703
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.702