29739.m003726 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29739.m003726 T48683_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
29739.m003726 RRM 46 112
29739.m003726 RRM 131 201
29739.m003726 RRM 251 317

Links

Other RRM family RBPs
Other Ricinus communis RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.922
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.912
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.902
MDP0000871411 Malus x domestica MDP0000871411 I 0.878
ppa006419m Prunus persica ppa006419m I 0.878
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.868
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.863
mgf001763m Mimulus guttatus mgf001763m I 0.854
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.850
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.850
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.850
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.850
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.845
PK22818.1 Cannabis sativa PK22818.1 I 0.844
29727.m000492 Ricinus communis 29727.m000492 I 0.840
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.836
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.835
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.835
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.835
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.835
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.835
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.835
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.835
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.835
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.835
PK20770.1 Cannabis sativa PK20770.1 I 0.835
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.830
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.830
ppa006170m Prunus persica ppa006170m I 0.825
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.825
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.820
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.820
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.816
mgf004534m Mimulus guttatus mgf004534m N 0.816
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.811
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.811
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.811
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.811
mgf015309m Mimulus guttatus mgf015309m N 0.797
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.795
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.790
MDP0000149711 Malus x domestica MDP0000149711 N 0.786
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.782
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.782
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.780
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.771
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.771
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.767
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.761
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.752
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.746
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.746
SB07G027050 Sorghum bicolor Sb07g027050 N 0.746
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.746
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.732
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.732
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.727
MDP0000147538 Malus x domestica MDP0000147538 N 0.725
ppa006248m Prunus persica ppa006248m I 0.725
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.725
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.720
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.720
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.715
28226.m000878 Ricinus communis 28226.m000878 I 0.705