ppa006248m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa006248m T58371_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.84.45.1
M198_0.6 		Physcomitrella patens YUUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00228 		0.737
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006248m RRM 63 129
ppa006248m RRM 148 218
ppa006248m RRM 269 335

Links

Other RRM family RBPs
Other Prunus persica RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.927
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.922
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.902
28226.m000878 Ricinus communis 28226.m000878 I 0.898
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.893
MDP0000201427 Malus x domestica MDP0000201427 N 0.859
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.784
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.784
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.784
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.784
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.778
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.769
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.768
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.764
29727.m000492 Ricinus communis 29727.m000492 I 0.764
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.764
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.764
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.764
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.764
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.764
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.764
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.764
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.764
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.763
MDP0000871411 Malus x domestica MDP0000871411 I 0.763
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.760
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.760
PK20770.1 Cannabis sativa PK20770.1 I 0.760
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.760
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.758
PK22818.1 Cannabis sativa PK22818.1 I 0.758
ppa006419m Prunus persica ppa006419m I 0.758
ppa006170m Prunus persica ppa006170m I 0.755
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.755
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.754
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.754
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.754
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.749
mgf001763m Mimulus guttatus mgf001763m I 0.749
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.745
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.744
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.744
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.741
e_gw1.84.182.1 Physcomitrella patens e_gw1.84.182.1 I 0.741
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.739
gw1.84.45.1 Physcomitrella patens gw1.84.45.1 D 0.737
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.734
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.734
mgf015309m Mimulus guttatus mgf015309m N 0.732
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.731
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.731
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.729
SB07G027050 Sorghum bicolor Sb07g027050 N 0.729
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.726
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.726
29739.m003726 Ricinus communis 29739.m003726 I 0.725
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.721
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.721
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.720
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.720
MDP0000149711 Malus x domestica MDP0000149711 N 0.716
mgf004534m Mimulus guttatus mgf004534m N 0.716
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.710
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.710