cassava23405.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava23405.valid.m1 T49197_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23405.valid.m1 RRM 15 83

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 1.000
ppa009964m Prunus persica ppa009964m I 0.884
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.855
mgf017214m Mimulus guttatus mgf017214m I 0.855
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.855
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.841
MDP0000138486 Malus x domestica MDP0000138486 I 0.841
PK21213.1 Cannabis sativa PK21213.1 I 0.841
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.841
CU179634_3 Medicago truncatula CU179634_3 I 0.826
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.812
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.812
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.812
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.797
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.797
ppa009716m Prunus persica ppa009716m I 0.797
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.797
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.783
MDP0000184420 Malus x domestica MDP0000184420 I 0.783
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.783
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.768
PK15672.1 Cannabis sativa PK15672.1 I 0.768
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.768
ppa019392m Prunus persica ppa019392m I 0.768
ppa018926m Prunus persica ppa018926m I 0.768
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.768
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.768
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.754
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.754
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.754
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.754
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.754
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.754
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.754
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.754
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.754
MDP0000284454 Malus x domestica MDP0000284454 I 0.739
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.739
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.739
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.739
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.739
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.739
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.739
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.739
30076.m004440 Ricinus communis 30076.m004440 I 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.725
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.725
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.725
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.725
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.725
29908.m006046 Ricinus communis 29908.m006046 I 0.725
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.725
MDP0000548950 Malus x domestica MDP0000548950 I 0.725
MDP0000488395 Malus x domestica MDP0000488395 I 0.725
MDP0000744398 Malus x domestica MDP0000744398 I 0.725
MDP0000134468 Malus x domestica MDP0000134468 I 0.725
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.725
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.725
MDP0000118777 Malus x domestica MDP0000118777 I 0.725
MDP0000857317 Malus x domestica MDP0000857317 I 0.725
mgf016660m Mimulus guttatus mgf016660m I 0.725
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.725
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.725
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.725
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.710
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.710
SB04G030020 Sorghum bicolor Sb04g030020 I 0.710
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.710
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.710
PK14266.1 Cannabis sativa PK14266.1 I 0.710
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.710
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
ppa018603m Prunus persica ppa018603m I 0.710
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.710
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.710
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
ppa016222m Prunus persica ppa016222m I 0.710
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.710