PDK_20s1770661g001 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1770661g001 T58232_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1770661g001 RRM 8 76
PDK_20s1770661g001 RRM 107 158

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.748
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.741
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.741
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.741
30048.m000319 Ricinus communis 30048.m000319 N 0.741
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.741
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.741
ppa005132m Prunus persica ppa005132m N 0.741
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.736
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.734
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.734
ppa005119m Prunus persica ppa005119m N 0.734
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.729
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.727
MDP0000320618 Malus x domestica MDP0000320618 N 0.727
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.727
mgf009385m Mimulus guttatus mgf009385m N 0.727
29608.m000212 Ricinus communis 29608.m000212 N 0.727
27613.m000635 Ricinus communis 27613.m000635 N 0.727
PK13457.1 Cannabis sativa PK13457.1 N 0.727
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.727
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.727
MDP0000642684 Malus x domestica MDP0000642684 N 0.719
MDP0000907782 Malus x domestica MDP0000907782 N 0.719
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.719
mgf012147m Mimulus guttatus mgf012147m N 0.719
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.712
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.712
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.709
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.705
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.705
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.705
PK25912.1 Cannabis sativa PK25912.1 N 0.705
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.705
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.705