CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1770661g001
(
Phoenix dactylifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PDK_20s1770661g001
T58232_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1770661g001
RRM
8
76
LFIGGISWDTNEDHLREYFKTYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVLMEMHVIDGRKVE
PDK_20s1770661g001
RRM
107
158
KIFFGNIIDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLLNTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Phoenix dactylifera
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.748
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.741
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.741
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.741
30048.m000319
Ricinus communis
30048.m000319
N
0.741
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.741
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.741
ppa005132m
Prunus persica
ppa005132m
N
0.741
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.736
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.734
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.734
ppa005119m
Prunus persica
ppa005119m
N
0.734
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.729
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.727
MDP0000320618
Malus x domestica
MDP0000320618
N
0.727
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.727
mgf009385m
Mimulus guttatus
mgf009385m
N
0.727
29608.m000212
Ricinus communis
29608.m000212
N
0.727
27613.m000635
Ricinus communis
27613.m000635
N
0.727
PK13457.1
Cannabis sativa
PK13457.1
N
0.727
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.727
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.727
MDP0000642684
Malus x domestica
MDP0000642684
N
0.719
MDP0000907782
Malus x domestica
MDP0000907782
N
0.719
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.719
mgf012147m
Mimulus guttatus
mgf012147m
N
0.719
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.712
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.712
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.709
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.705
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.705
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.705
PK25912.1
Cannabis sativa
PK25912.1
N
0.705
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.705
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.705