CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AT3G07810
(
Arabidopsis thaliana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AT3G07810-TAIR-G
T32723_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G07810.1-P
RRM
8
76
LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVE
AT3G07810.1-P
RRM
110
179
IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE
AT3G07810.2-P
RRM
8
76
LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVE
AT3G07810.2-P
RRM
110
179
IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
75 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
1.000
ppa005119m
Prunus persica
ppa005119m
N
0.921
ppa005132m
Prunus persica
ppa005132m
N
0.914
MDP0000320618
Malus x domestica
MDP0000320618
N
0.914
MDP0000907782
Malus x domestica
MDP0000907782
N
0.906
MDP0000642684
Malus x domestica
MDP0000642684
N
0.899
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.892
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.892
29608.m000212
Ricinus communis
29608.m000212
N
0.885
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.878
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.878
30048.m000319
Ricinus communis
30048.m000319
N
0.863
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.856
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.856
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.850
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.849
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.849
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.849
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.844
ppa005122m
Prunus persica
ppa005122m
N
0.842
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.842
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.842
ppa004834m
Prunus persica
ppa004834m
N
0.842
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.842
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.842
27613.m000635
Ricinus communis
27613.m000635
N
0.842
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.842
MDP0000204698
Malus x domestica
MDP0000204698
N
0.835
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.835
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.835
MDP0000188788
Malus x domestica
MDP0000188788
N
0.835
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.835
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.835
MDP0000609551
Malus x domestica
MDP0000609551
N
0.835
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.835
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.835
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.835
PK25912.1
Cannabis sativa
PK25912.1
N
0.835
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.829
mgf009385m
Mimulus guttatus
mgf009385m
N
0.827
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.827
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.827
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.827
PK13457.1
Cannabis sativa
PK13457.1
N
0.827
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.821
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.820
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.813
mgf012147m
Mimulus guttatus
mgf012147m
N
0.813
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.806
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.799
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.799
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.799
mgf004139m
Mimulus guttatus
mgf004139m
N
0.791
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.791
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.791
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.791
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.791
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.791
mgf009486m
Mimulus guttatus
mgf009486m
N
0.786
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.784
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.784
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.777
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.777
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.770
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.770
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.770
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.763
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.763
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.763
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.755
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.734
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.730
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.712
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.705