GSVIVG00030040001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00030040001 T44754_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00030040001 RRM 8 76
GSVIVT00030040001 RRM 108 177

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.935
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.935
ppa005119m Prunus persica ppa005119m N 0.928
ppa005132m Prunus persica ppa005132m N 0.928
MDP0000320618 Malus x domestica MDP0000320618 N 0.921
MDP0000907782 Malus x domestica MDP0000907782 N 0.914
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.914
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.906
MDP0000642684 Malus x domestica MDP0000642684 N 0.906
29608.m000212 Ricinus communis 29608.m000212 N 0.899
30048.m000319 Ricinus communis 30048.m000319 N 0.899
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.892
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.892
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.892
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.892
PK25912.1 Cannabis sativa PK25912.1 N 0.892
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.885
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.885
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.885
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.879
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.878
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.878
mgf012147m Mimulus guttatus mgf012147m N 0.878
ppa005122m Prunus persica ppa005122m N 0.878
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.878
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.878
27613.m000635 Ricinus communis 27613.m000635 N 0.878
ppa004834m Prunus persica ppa004834m N 0.878
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.871
MDP0000204698 Malus x domestica MDP0000204698 N 0.871
MDP0000188788 Malus x domestica MDP0000188788 N 0.871
mgf009385m Mimulus guttatus mgf009385m N 0.871
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.871
MDP0000609551 Malus x domestica MDP0000609551 N 0.871
PK13457.1 Cannabis sativa PK13457.1 N 0.871
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.871
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.864
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.863
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.857
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.856
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.856
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.856
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.856
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.856
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.849
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.849
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.849
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.842
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.835
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.835
mgf009486m Mimulus guttatus mgf009486m N 0.821
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.820
SB02G005670 Sorghum bicolor Sb02g005670 N 0.813
SB02G005620 Sorghum bicolor Sb02g005620 N 0.813
mgf004139m Mimulus guttatus mgf004139m N 0.813
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.813
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.806
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.806
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.799
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.799
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.799
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.799
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.799
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.791
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.784
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.784
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.784
SB02G037690 Sorghum bicolor Sb02g037690 N 0.784
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.780
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.777
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.763
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.741
SB05G025410 Sorghum bicolor Sb05g025410 N 0.734
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719