BRADI4G12200 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI4G12200 T33281_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G12200.1 RRM 8 76
BRADI4G12200.1 RRM 108 178

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.971
30048.m000319 Ricinus communis 30048.m000319 N 0.879
29608.m000212 Ricinus communis 29608.m000212 N 0.879
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.871
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.871
ppa005132m Prunus persica ppa005132m N 0.871
ppa005119m Prunus persica ppa005119m N 0.871
ppa005122m Prunus persica ppa005122m N 0.871
ppa004834m Prunus persica ppa004834m N 0.871
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.864
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.864
MDP0000204698 Malus x domestica MDP0000204698 N 0.864
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.864
mgf012147m Mimulus guttatus mgf012147m N 0.864
MDP0000188788 Malus x domestica MDP0000188788 N 0.864
MDP0000320618 Malus x domestica MDP0000320618 N 0.864
MDP0000609551 Malus x domestica MDP0000609551 N 0.864
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.864
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.864
PK25912.1 Cannabis sativa PK25912.1 N 0.857
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.857
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.857
MDP0000907782 Malus x domestica MDP0000907782 N 0.857
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.857
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.857
27613.m000635 Ricinus communis 27613.m000635 N 0.857
mgf009385m Mimulus guttatus mgf009385m N 0.857
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.850
MDP0000642684 Malus x domestica MDP0000642684 N 0.850
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.850
SB02G005670 Sorghum bicolor Sb02g005670 N 0.850
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.850
SB02G005620 Sorghum bicolor Sb02g005620 N 0.850
PK13457.1 Cannabis sativa PK13457.1 N 0.850
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.850
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.850
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.843
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.843
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.843
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.843
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.837
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.836
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.836
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.836
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.836
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.836
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.829
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.829
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.829
SB02G037690 Sorghum bicolor Sb02g037690 N 0.829
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.829
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.829
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.829
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.829
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.829
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.829
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.821
mgf009486m Mimulus guttatus mgf009486m N 0.814
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.814
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.814
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.814
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.814
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.814
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.807
mgf004139m Mimulus guttatus mgf004139m N 0.800
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.800
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.793
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.786
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.786
SB05G025410 Sorghum bicolor Sb05g025410 N 0.779
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.757
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.743
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.729
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.723