POPTR_0016s01150 (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0016s01150 T45674_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s01150.1 RRM 8 76
POPTR_0016s01150.1 RRM 108 177

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.971
30048.m000319 Ricinus communis 30048.m000319 N 0.935
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.914
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.914
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.914
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.899
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.899
MDP0000204698 Malus x domestica MDP0000204698 N 0.892
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.892
PK13457.1 Cannabis sativa PK13457.1 N 0.892
MDP0000609551 Malus x domestica MDP0000609551 N 0.885
ppa004834m Prunus persica ppa004834m N 0.885
MDP0000188788 Malus x domestica MDP0000188788 N 0.885
ppa005122m Prunus persica ppa005122m N 0.885
PK25912.1 Cannabis sativa PK25912.1 N 0.885
ppa005132m Prunus persica ppa005132m N 0.878
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.878
ppa005119m Prunus persica ppa005119m N 0.878
MDP0000907782 Malus x domestica MDP0000907782 N 0.871
mgf012147m Mimulus guttatus mgf012147m N 0.871
MDP0000320618 Malus x domestica MDP0000320618 N 0.871
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.871
27613.m000635 Ricinus communis 27613.m000635 N 0.863
29608.m000212 Ricinus communis 29608.m000212 N 0.863
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.863
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.863
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.856
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.856
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.856
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.856
mgf009385m Mimulus guttatus mgf009385m N 0.856
MDP0000642684 Malus x domestica MDP0000642684 N 0.856
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.849
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.849
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.849
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.844
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.843
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.842
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.842
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.842
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.836
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.836
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.835
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.835
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.835
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.835
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.835
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.827
mgf004139m Mimulus guttatus mgf004139m N 0.827
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.827
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.820
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.813
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.813
SB02G005670 Sorghum bicolor Sb02g005670 N 0.806
SB02G005620 Sorghum bicolor Sb02g005620 N 0.806
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.806
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.806
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.799
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.799
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.799
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.799
mgf009486m Mimulus guttatus mgf009486m N 0.793
SB02G037690 Sorghum bicolor Sb02g037690 N 0.791
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.791
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.791
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.791
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.777
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.777
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.777
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.745
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.734
SB05G025410 Sorghum bicolor Sb05g025410 N 0.734
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.719
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.712