B9I165_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0011s09050 T45614_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s09050.1 RRM 8 76
POPTR_0011s09050.1 RRM 108 177
POPTR_0011s09050.2 RRM 8 76
POPTR_0011s09050.2 RRM 108 177

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.942
27613.m000635 Ricinus communis 27613.m000635 N 0.914
PK25912.1 Cannabis sativa PK25912.1 N 0.914
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.906
ppa005122m Prunus persica ppa005122m N 0.906
ppa004834m Prunus persica ppa004834m N 0.906
MDP0000204698 Malus x domestica MDP0000204698 N 0.899
MDP0000188788 Malus x domestica MDP0000188788 N 0.892
MDP0000609551 Malus x domestica MDP0000609551 N 0.892
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.885
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.878
29608.m000212 Ricinus communis 29608.m000212 N 0.878
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.871
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.871
ppa005119m Prunus persica ppa005119m N 0.871
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.871
ppa005132m Prunus persica ppa005132m N 0.871
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.863
MDP0000320618 Malus x domestica MDP0000320618 N 0.863
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.863
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.863
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.863
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.863
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.857
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.857
MDP0000907782 Malus x domestica MDP0000907782 N 0.856
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.856
30048.m000319 Ricinus communis 30048.m000319 N 0.856
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.856
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.856
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.856
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.850
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.849
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.849
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.849
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.849
MDP0000642684 Malus x domestica MDP0000642684 N 0.849
mgf012147m Mimulus guttatus mgf012147m N 0.849
mgf009385m Mimulus guttatus mgf009385m N 0.849
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.844
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.842
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.842
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.842
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.842
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.842
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.835
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.835
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.835
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.827
PK13457.1 Cannabis sativa PK13457.1 N 0.827
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.820
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.820
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.820
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.813
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.813
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.806
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.806
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.806
SB02G037690 Sorghum bicolor Sb02g037690 N 0.806
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.806
mgf009486m Mimulus guttatus mgf009486m N 0.800
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
mgf004139m Mimulus guttatus mgf004139m N 0.791
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.791
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.791
SB02G005620 Sorghum bicolor Sb02g005620 N 0.784
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.784
SB02G005670 Sorghum bicolor Sb02g005670 N 0.784
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.784
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.755
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.741
SB05G025410 Sorghum bicolor Sb05g025410 N 0.734
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.727
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.712
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.705
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.702