CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9I165_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0011s09050
T45614_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0011s09050.1
RRM
8
76
LFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRATGRARGFGFVVFADLTVAERVIMEKHVIDGRTVE
POPTR_0011s09050.1
RRM
108
177
IFVGGLASTVTENEFKKYFEQYGIIIDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE
POPTR_0011s09050.2
RRM
8
76
LFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRATGRARGFGFVVFADLTVAERVIMEKHVIDGRTVE
POPTR_0011s09050.2
RRM
108
177
IFVGGLASTVTENEFKKYFEQYGIIIDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.942
27613.m000635
Ricinus communis
27613.m000635
N
0.914
PK25912.1
Cannabis sativa
PK25912.1
N
0.914
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.906
ppa005122m
Prunus persica
ppa005122m
N
0.906
ppa004834m
Prunus persica
ppa004834m
N
0.906
MDP0000204698
Malus x domestica
MDP0000204698
N
0.899
MDP0000188788
Malus x domestica
MDP0000188788
N
0.892
MDP0000609551
Malus x domestica
MDP0000609551
N
0.892
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.885
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.878
29608.m000212
Ricinus communis
29608.m000212
N
0.878
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.871
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.871
ppa005119m
Prunus persica
ppa005119m
N
0.871
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.871
ppa005132m
Prunus persica
ppa005132m
N
0.871
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.863
MDP0000320618
Malus x domestica
MDP0000320618
N
0.863
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.863
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.863
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.863
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.863
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.857
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.857
MDP0000907782
Malus x domestica
MDP0000907782
N
0.856
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.856
30048.m000319
Ricinus communis
30048.m000319
N
0.856
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.856
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.856
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.856
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.850
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.849
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.849
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.849
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.849
MDP0000642684
Malus x domestica
MDP0000642684
N
0.849
mgf012147m
Mimulus guttatus
mgf012147m
N
0.849
mgf009385m
Mimulus guttatus
mgf009385m
N
0.849
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.844
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.842
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.842
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.842
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.842
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.842
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.835
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.835
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.835
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.827
PK13457.1
Cannabis sativa
PK13457.1
N
0.827
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.820
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.820
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.820
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.813
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.813
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.806
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.806
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.806
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.806
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.806
mgf009486m
Mimulus guttatus
mgf009486m
N
0.800
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.799
mgf004139m
Mimulus guttatus
mgf004139m
N
0.791
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.791
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.791
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.784
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.784
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.784
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.784
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.755
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.741
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.734
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.727
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.719
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.712
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.705
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.702