CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK25912.1
(
Cannabis sativa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PK25912.1
T31767_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK25912.1
RRM
13
81
LFIGGISWDTDEERLKEYFGNYGEVVEAVIMRDRATGRARGFGFVVFADPGVAERVIMDKHIIDGRTVE
PK25912.1
RRM
113
182
IFVGGLASTVTESDFKKYFDQFGMITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Cannabis sativa
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa004834m
Prunus persica
ppa004834m
N
0.950
ppa005122m
Prunus persica
ppa005122m
N
0.950
MDP0000204698
Malus x domestica
MDP0000204698
N
0.942
MDP0000609551
Malus x domestica
MDP0000609551
N
0.935
MDP0000188788
Malus x domestica
MDP0000188788
N
0.935
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.928
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.928
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.928
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.928
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.928
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.921
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.921
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.921
27613.m000635
Ricinus communis
27613.m000635
N
0.921
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.921
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.914
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.914
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.906
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.899
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.892
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.892
30048.m000319
Ricinus communis
30048.m000319
N
0.892
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.885
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.885
mgf012147m
Mimulus guttatus
mgf012147m
N
0.885
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.885
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.885
ppa005119m
Prunus persica
ppa005119m
N
0.885
ppa005132m
Prunus persica
ppa005132m
N
0.885
mgf009385m
Mimulus guttatus
mgf009385m
N
0.878
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.878
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.878
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.878
29608.m000212
Ricinus communis
29608.m000212
N
0.878
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.878
MDP0000320618
Malus x domestica
MDP0000320618
N
0.878
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.871
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.871
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.871
MDP0000907782
Malus x domestica
MDP0000907782
N
0.871
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.871
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.864
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.863
MDP0000642684
Malus x domestica
MDP0000642684
N
0.863
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.863
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.857
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.856
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.856
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.851
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.849
PK13457.1
Cannabis sativa
PK13457.1
N
0.849
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.842
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.842
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.835
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.835
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.827
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.827
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.820
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.820
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.820
mgf004139m
Mimulus guttatus
mgf004139m
N
0.820
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.820
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.813
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.813
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.813
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.813
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.813
mgf009486m
Mimulus guttatus
mgf009486m
N
0.807
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.806
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.784
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.770
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.734
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.734
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.730
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.719
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.719
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.712
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.712
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.705
ppa005309m
Prunus persica
ppa005309m
N
0.705