PK25912.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK25912.1 T31767_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK25912.1 RRM 13 81
PK25912.1 RRM 113 182

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa004834m Prunus persica ppa004834m N 0.950
ppa005122m Prunus persica ppa005122m N 0.950
MDP0000204698 Malus x domestica MDP0000204698 N 0.942
MDP0000609551 Malus x domestica MDP0000609551 N 0.935
MDP0000188788 Malus x domestica MDP0000188788 N 0.935
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.928
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.928
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.928
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.928
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.928
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.921
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.921
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.921
27613.m000635 Ricinus communis 27613.m000635 N 0.921
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.921
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.914
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.914
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.906
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.899
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.892
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.892
30048.m000319 Ricinus communis 30048.m000319 N 0.892
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.885
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.885
mgf012147m Mimulus guttatus mgf012147m N 0.885
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.885
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.885
ppa005119m Prunus persica ppa005119m N 0.885
ppa005132m Prunus persica ppa005132m N 0.885
mgf009385m Mimulus guttatus mgf009385m N 0.878
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.878
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.878
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.878
29608.m000212 Ricinus communis 29608.m000212 N 0.878
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.878
MDP0000320618 Malus x domestica MDP0000320618 N 0.878
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.871
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.871
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.871
MDP0000907782 Malus x domestica MDP0000907782 N 0.871
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.871
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.864
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.863
MDP0000642684 Malus x domestica MDP0000642684 N 0.863
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.863
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.857
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.856
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.856
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.851
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.849
PK13457.1 Cannabis sativa PK13457.1 N 0.849
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.842
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.842
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.835
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.835
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.827
SB02G037690 Sorghum bicolor Sb02g037690 N 0.827
SB02G005670 Sorghum bicolor Sb02g005670 N 0.820
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.820
SB02G005620 Sorghum bicolor Sb02g005620 N 0.820
mgf004139m Mimulus guttatus mgf004139m N 0.820
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.820
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.813
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.813
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.813
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.813
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.813
mgf009486m Mimulus guttatus mgf009486m N 0.807
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.806
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.784
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.770
SB05G025410 Sorghum bicolor Sb05g025410 N 0.734
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.734
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.719
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.719
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.712
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.712
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.705
ppa005309m Prunus persica ppa005309m N 0.705