XP_001192920.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_001192920.1 T58947_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.739
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001192920.1 RRM 47 116
XP_001192920.1 RRM 135 200
XP_001192920.1 RRM 426 496

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 1.000
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.759
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.745
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.745
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.741
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.741
celf5 Danio rerio ENSDARG00000071375 I 0.736
Celf4 Mus musculus ENSMUSG00000024268 I 0.736
CELF4 Oryzias latipes ENSORLG00000008913 I 0.736
BRUNOL5 Homo sapiens ENSG00000161082 D 0.731
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.731
CELF5 Oryzias latipes ENSORLG00000004600 I 0.731
ACH69785 Xenopus laevis ACH69785 I 0.731
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.726
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.726
AAA81375 Xenopus laevis AAA81375 I 0.726
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.726
AAH72134 Xenopus laevis AAH72134 I 0.726
Celf3 Mus musculus ENSMUSG00000028137 I 0.726
AAH57704 Xenopus laevis AAH57704 I 0.726
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.726
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.726
Q91579 Xenopus laevis Q91579 I 0.726
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.726
CELF3 Canis familiaris ENSCAFG00000012794 I 0.726
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.726
CELF3 Equus caballus ENSECAG00000020365 I 0.726
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.726
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.726
CELF3 Homo sapiens ENSG00000159409 I 0.726
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.726
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.722
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.722
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.722
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.722
AAH46942 Xenopus laevis AAH46942 I 0.722
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.722
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.712
CELF6 Sus scrofa ENSSSCG00000001928 I 0.712
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.712
CELF6 Felis catus ENSFCAG00000016249 I 0.712
CELF6 Bos taurus ENSBTAG00000014092 I 0.712
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.708
CELF3 Sus scrofa ENSSSCG00000006618 I 0.708
HEXA Macaca mulatta ENSMMUG00000010687 I 0.708
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.708
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.708
BRUNOL6 Homo sapiens ENSG00000140488 D 0.708
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.708
Celf6 Mus musculus ENSMUSG00000032297 I 0.708
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.708
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.703
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.703
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.703
CELF3 Procavia capensis ENSPCAG00000001623 I 0.703
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.702
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.701