Celf6 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000004882 T36443_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.863
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000004570 RRM 38 107
ENSDORP00000004570 RRM 126 178
ENSDORP00000004570 RRM 371 441

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.887
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.875
Celf6 Mus musculus ENSMUSG00000032297 I 0.867
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.867
CELF6 Sus scrofa ENSSSCG00000001928 I 0.867
CELF6 Bos taurus ENSBTAG00000014092 I 0.867
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.867
HEXA Macaca mulatta ENSMMUG00000010687 I 0.867
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.867
BRUNOL6 Homo sapiens ENSG00000140488 D 0.867
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.867
CELF6 Felis catus ENSFCAG00000016249 I 0.867
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.863
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.857
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.852
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.814
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.800
BRUNOL5 Homo sapiens ENSG00000161082 D 0.790
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.776
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.776
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.771
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.771
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.771
Celf4 Mus musculus ENSMUSG00000024268 I 0.771
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.767
ACH69785 Xenopus laevis ACH69785 I 0.767
AAH57704 Xenopus laevis AAH57704 I 0.762
Q91579 Xenopus laevis Q91579 I 0.762
AAH72134 Xenopus laevis AAH72134 I 0.762
AAA81375 Xenopus laevis AAA81375 I 0.762
celf5 Danio rerio ENSDARG00000071375 I 0.762
CELF5 Oryzias latipes ENSORLG00000004600 I 0.762
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.761
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.757
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.757
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.757
CELF4 Oryzias latipes ENSORLG00000008913 I 0.757
AAH46942 Xenopus laevis AAH46942 I 0.752
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.752
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.752
celf3 Danio rerio ENSDARG00000034668 I 0.752
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.752
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.752
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.752
CELF3 Canis familiaris ENSCAFG00000012794 I 0.752
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.752
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.752
CELF3 Homo sapiens ENSG00000159409 I 0.752
CELF3 Equus caballus ENSECAG00000020365 I 0.752
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.752
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.752
Celf3 Mus musculus ENSMUSG00000028137 I 0.752
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.752
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.752
CELF3 Danio rerio ENSDARG00000006983 I 0.743
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.743
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.738
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.737
CELF3 Sus scrofa ENSSSCG00000006618 I 0.733
CELF3 Oryzias latipes ENSORLG00000010447 I 0.729
CELF3 Procavia capensis ENSPCAG00000001623 I 0.724
CELF6 Procavia capensis ENSPCAG00000001078 N 0.712
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.711
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.702
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.702
CBG15358 Caenorhabditis briggsae CBG15358 I 0.701
CRE09771 Caenorhabditis remanei CRE09771 I 0.701
Bm1_27610 Brugia malayi Bm1_27610 I 0.700
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.700