GRMZM2G127780 (Zea mays)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 GRMZM2G127780 T62440_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G127780_P01 YTH 426 516
GRMZM2G127780_P02 YTH 154 244

Links

Other YTH family RBPs
Other Zea mays RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G031190 Sorghum bicolor Sb03g031190 N 0.989
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.989
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.956
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.956
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.956
MDP0000231231 Malus x domestica MDP0000231231 N 0.879
MDP0000286471 Malus x domestica MDP0000286471 N 0.879
29955.m001158 Ricinus communis 29955.m001158 N 0.868
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.868
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.868
ppa003664m Prunus persica ppa003664m N 0.868
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.857
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.857
MDP0000171737 Malus x domestica MDP0000171737 N 0.857
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.857
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.846
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.846
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.835
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.824
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.824
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.824
PK23104.1 Cannabis sativa PK23104.1 N 0.824
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.824
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.813
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.813
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.813
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.813
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.813
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.813
ppa018635m Prunus persica ppa018635m N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.802
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.802
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.802
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
MDP0000287088 Malus x domestica MDP0000287088 N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
29889.m003364 Ricinus communis 29889.m003364 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.791
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
MDP0000405927 Malus x domestica MDP0000405927 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
MDP0000617859 Malus x domestica MDP0000617859 N 0.791
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.791
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
PK02315.1 Cannabis sativa PK02315.1 N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.780
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.780
mgf015583m Mimulus guttatus mgf015583m N 0.780
mgf017987m Mimulus guttatus mgf017987m N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.780
MDP0000248088 Malus x domestica MDP0000248088 N 0.780
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.780
mgf014143m Mimulus guttatus mgf014143m N 0.780
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.780
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.769
PK01736.1 Cannabis sativa PK01736.1 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.758
PK26094.1 Cannabis sativa PK26094.1 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
mgf019821m Mimulus guttatus mgf019821m N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
mgf001716m Mimulus guttatus mgf001716m N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
29890.m000285 Ricinus communis 29890.m000285 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
SB06G027960 Sorghum bicolor Sb06g027960 N 0.725
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.725
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.725
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
ppa002677m Prunus persica ppa002677m N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
MDP0000256033 Malus x domestica MDP0000256033 N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
29950.m001140 Ricinus communis 29950.m001140 N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.703
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703