29955.m001158 (Ricinus communis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 29955.m001158 T62295_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29955.m001158 YTH 431 521

Links

Other YTH family RBPs
Other Ricinus communis RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.934
ppa003664m Prunus persica ppa003664m N 0.912
MDP0000171737 Malus x domestica MDP0000171737 N 0.912
MDP0000231231 Malus x domestica MDP0000231231 N 0.901
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.901
MDP0000286471 Malus x domestica MDP0000286471 N 0.901
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.890
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.890
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.890
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.890
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.890
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.890
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.890
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.879
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.879
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.879
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.879
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.868
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.868
SB03G031190 Sorghum bicolor Sb03g031190 N 0.868
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.868
PK23104.1 Cannabis sativa PK23104.1 N 0.857
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.835
29889.m003364 Ricinus communis 29889.m003364 N 0.824
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.824
MDP0000617859 Malus x domestica MDP0000617859 N 0.824
MDP0000405927 Malus x domestica MDP0000405927 N 0.824
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.824
MDP0000287088 Malus x domestica MDP0000287088 N 0.824
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.824
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
PK02315.1 Cannabis sativa PK02315.1 N 0.813
MDP0000552419 Malus x domestica MDP0000552419 N 0.813
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.813
MDP0000248088 Malus x domestica MDP0000248088 N 0.813
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.813
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
PK26094.1 Cannabis sativa PK26094.1 N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.802
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.802
ppa002588m Prunus persica ppa002588m N 0.802
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.802
ppa018635m Prunus persica ppa018635m N 0.802
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.802
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.802
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.802
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
mgf001716m Mimulus guttatus mgf001716m N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.791
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.791
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.791
mgf014829m Mimulus guttatus mgf014829m N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
MDP0000488248 Malus x domestica MDP0000488248 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.780
PK01736.1 Cannabis sativa PK01736.1 N 0.780
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
mgf019821m Mimulus guttatus mgf019821m N 0.780
mgf015583m Mimulus guttatus mgf015583m N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
mgf014143m Mimulus guttatus mgf014143m N 0.769
mgf017987m Mimulus guttatus mgf017987m N 0.769
MDP0000256033 Malus x domestica MDP0000256033 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.758
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.758
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.758
mgf019846m Mimulus guttatus mgf019846m N 0.758
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.758
ppa003557m Prunus persica ppa003557m N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
29765.m000746 Ricinus communis 29765.m000746 N 0.747
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.736
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.736
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.736
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.736
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.725
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.725
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
ppa002677m Prunus persica ppa002677m N 0.725
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
PK05579.1 Cannabis sativa PK05579.1 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.725
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
MDP0000199885 Malus x domestica MDP0000199885 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
29950.m001140 Ricinus communis 29950.m001140 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.703
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.703