SB03G031190 (Sorghum bicolor)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Sb03g031190 T62260_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g031190.1 YTH 426 516

Links

Other YTH family RBPs
Other Sorghum bicolor RBPs

185 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G169116 Zea mays GRMZM2G169116 N 1.000
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.989
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.967
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.967
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.967
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.879
ppa003664m Prunus persica ppa003664m N 0.879
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.868
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.868
29955.m001158 Ricinus communis 29955.m001158 N 0.868
MDP0000286471 Malus x domestica MDP0000286471 N 0.868
MDP0000231231 Malus x domestica MDP0000231231 N 0.868
MDP0000171737 Malus x domestica MDP0000171737 N 0.868
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.868
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.857
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.857
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.846
PK23104.1 Cannabis sativa PK23104.1 N 0.835
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.835
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.824
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.824
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.824
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.824
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.824
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.813
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.813
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.813
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.813
ppa002588m Prunus persica ppa002588m N 0.802
ppa018635m Prunus persica ppa018635m N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.802
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.802
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.802
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.802
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.802
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.802
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
MDP0000287088 Malus x domestica MDP0000287088 N 0.802
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.802
MDP0000405927 Malus x domestica MDP0000405927 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.802
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.802
PK02315.1 Cannabis sativa PK02315.1 N 0.791
MDP0000248088 Malus x domestica MDP0000248088 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
29889.m003364 Ricinus communis 29889.m003364 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.791
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.791
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.780
mgf017987m Mimulus guttatus mgf017987m N 0.780
mgf015583m Mimulus guttatus mgf015583m N 0.780
mgf014143m Mimulus guttatus mgf014143m N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.780
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.780
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.758
mgf019821m Mimulus guttatus mgf019821m N 0.758
PK01736.1 Cannabis sativa PK01736.1 N 0.758
PK26094.1 Cannabis sativa PK26094.1 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
29890.m000285 Ricinus communis 29890.m000285 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.747
mgf001716m Mimulus guttatus mgf001716m N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.736
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.725
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.725
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.714
29950.m001140 Ricinus communis 29950.m001140 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.714
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
MDP0000256033 Malus x domestica MDP0000256033 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
MDP0000129009 Malus x domestica MDP0000129009 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
ppa002677m Prunus persica ppa002677m N 0.703
MDP0000718677 Malus x domestica MDP0000718677 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
PK23716.1 Cannabis sativa PK23716.1 N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.703
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703