B9HYD4_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0010s18300 T62250_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s18300.1 YTH 450 540
POPTR_0010s18300.2 YTH 450 540
POPTR_0010s18300.3 YTH 450 540

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.956
MDP0000171737 Malus x domestica MDP0000171737 N 0.945
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.934
MDP0000286471 Malus x domestica MDP0000286471 N 0.923
ppa003664m Prunus persica ppa003664m N 0.923
MDP0000231231 Malus x domestica MDP0000231231 N 0.923
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.912
PK23104.1 Cannabis sativa PK23104.1 N 0.912
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.901
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.901
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.901
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.901
29955.m001158 Ricinus communis 29955.m001158 N 0.890
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.879
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.879
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.879
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.868
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.868
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.868
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.868
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.857
SB03G031190 Sorghum bicolor Sb03g031190 N 0.857
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.846
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
MDP0000405927 Malus x domestica MDP0000405927 N 0.802
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.802
MDP0000287088 Malus x domestica MDP0000287088 N 0.802
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.802
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
PK26094.1 Cannabis sativa PK26094.1 N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.780
ppa018635m Prunus persica ppa018635m N 0.780
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
PK02315.1 Cannabis sativa PK02315.1 N 0.780
29889.m003364 Ricinus communis 29889.m003364 N 0.769
MDP0000488248 Malus x domestica MDP0000488248 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.769
mgf015583m Mimulus guttatus mgf015583m N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
mgf014829m Mimulus guttatus mgf014829m N 0.758
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.758
MDP0000256033 Malus x domestica MDP0000256033 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.747
SB07G024500 Sorghum bicolor Sb07g024500 N 0.747
29765.m000746 Ricinus communis 29765.m000746 N 0.747
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.747
ppa003557m Prunus persica ppa003557m N 0.747
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.747
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.747
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.736
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.736
PK01736.1 Cannabis sativa PK01736.1 N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.736
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.736
mgf019821m Mimulus guttatus mgf019821m N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.725
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
SB02G003990 Sorghum bicolor Sb02g003990 N 0.725
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.714
ppa002677m Prunus persica ppa002677m N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703