MDP0000277305 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000277305 T25199_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000277305 PUF 1289 1323
MDP0000277305 PUF 1325 1359
MDP0000277305 PUF 1361 1395
MDP0000277305 PUF 1397 1431
MDP0000277305 PUF 1433 1467
MDP0000277305 PUF 1470 1504
MDP0000277305 PUF 1506 1540
MDP0000277305 PUF 1548 1582

Links

Other PUF family RBPs
Other Malus x domestica RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006300 Ricinus communis 30169.m006300 N 0.839
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.764
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.708
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.765
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.730
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.780
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.836
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.829
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.705
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.706
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.701
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.722
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.736
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.784
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.762
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.777
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.765
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.757
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.836
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.809
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.719
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.708
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.765
MDP0000265231 Malus x domestica MDP0000265231 N 0.812
MDP0000313902 Malus x domestica MDP0000313902 N 0.921
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.745
mgf002285m Mimulus guttatus mgf002285m N 0.738
mgf006786m Mimulus guttatus mgf006786m N 0.804
PK11972.1 Cannabis sativa PK11972.1 N 0.789
PK12245.1 Cannabis sativa PK12245.1 N 0.794
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.829
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.770
ppa000898m Prunus persica ppa000898m N 0.812
ppa016404m Prunus persica ppa016404m N 0.907
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.758