ELAVL1 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000010657 T37482_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.884
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.884
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.884
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.884
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.884
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.884
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.795
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.795
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.795
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.772
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.772
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.772
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000014116 RRM 21 91
ENSGACP00000014116 RRM 107 178
ENSGACP00000014116 RRM 248 318

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

162 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.888
AAA96943 Xenopus laevis AAA96943 I 0.795
AAA96944 Xenopus laevis AAA96944 I 0.752
AAA96945 Xenopus laevis AAA96945 I 0.772
AAH86269 Xenopus laevis AAH86269 I 0.893
AAH94189 Xenopus laevis AAH94189 I 0.795
AAH99348 Xenopus laevis AAH99348 I 0.772
AAI16460 Xenopus laevis AAI16460 I 0.849
AAI69769 Xenopus laevis AAI69769 I 0.752
AAI70539 Xenopus laevis AAI70539 I 0.795
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.707
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.795
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.752
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.772
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.884
CAA59430 Xenopus laevis CAA59430 I 0.791
CBF67567 Xenopus laevis CBF67567 I 0.772
CBU92440 Xenopus laevis CBU92440 I 0.772
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.772
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.752
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.795
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.884
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.752
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.772
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.795
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.772
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.752
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.884
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.772
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.724
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.795
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.772
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.727
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.772
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.795
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.729
elavl3 Danio rerio ENSDARG00000014420 I 0.762
hug Danio rerio ENSDARG00000016405 I 0.864
elavl1 Danio rerio ENSDARG00000038695 I 0.907
elavl2 Danio rerio ENSDARG00000040732 I 0.781
elavl4 Danio rerio ENSDARG00000045639 I 0.777
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.772
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.874
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.748
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.884
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.795
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.772
LOC100060819 Equus caballus ENSECAG00000019459 I 0.879
ELAVL2 Equus caballus ENSECAG00000020142 I 0.795
LOC100051268 Equus caballus ENSECAG00000022284 I 0.772
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.772
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.795
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.724
ELAVL1 Felis catus ENSFCAG00000014947 I 0.884
ELAVL1 Homo sapiens ENSG00000066044 D 0.884
ELAVL2 Homo sapiens ENSG00000107105 D 0.795
ELAVL4 Homo sapiens ENSG00000162374 D 0.772
ELAVL3 Homo sapiens ENSG00000196361 I 0.752
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.772
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.864
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.762
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.781
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.893
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.772
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.791
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.772
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.795
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.884
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.752
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.772
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.884
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.752
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.795
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.772
ELAVL1 Macropus eugenii ENSMEUG00000010702 I 0.707
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.757
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.893
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.777
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.772
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.884
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.772
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.879
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.791
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.884
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.795
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.772
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.772
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.795
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.884
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.729
Elavl3 Mus musculus ENSMUSG00000003410 I 0.752
Elavl2 Mus musculus ENSMUSG00000008489 I 0.795
Elavl4 Mus musculus ENSMUSG00000028546 I 0.772
Elavl1 Mus musculus ENSMUSG00000040028 I 0.884
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.720
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.795
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.874
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.772
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.752
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.884
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.772
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.874
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.795
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.772
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.855
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.786
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.762
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.930
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.772
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.772
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.748
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.724
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.772
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.884
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.795
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.772
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.884
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.729
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.795
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.744
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.795
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.715
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.752
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.884
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.795
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.752
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.772
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.795
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.772
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.726
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.795
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.865
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.752
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.865
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.893
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.781
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.772
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.781
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.772
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.762
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.884
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.772
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.888
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.818
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.777
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.762
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.772
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.884
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.776
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.752
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.744
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.795
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.795
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.772
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.772
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.888
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.757
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.704
Q1JQ73 Xenopus laevis Q1JQ73 I 0.849
Q5U259 Xenopus laevis Q5U259 I 0.893
Q91584 Xenopus laevis Q91584 I 0.752
Q91903 Xenopus laevis Q91903 I 0.795