RBM42 (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000013053 T40394_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		1.000
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000012187 RRM 378 448

Links

Other RRM family RBPs
Other Procavia capensis RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R008142 Ailuropoda melanoleuca Ame_R008142 N 0.000
BOLL Anolis carolinensis ENSACAG00000009285 N 0.000
C1JGV6_BOVIN Bos taurus ENSBTAG00000031614 N 0.000
BOLL Canis familiaris ENSCAFG00000010947 N 0.000
BOLL Choloepus hoffmanni ENSCHOG00000012634 N 0.000
Q6EVI8_CALJA Callithrix jacchus ENSCJAG00000004092 N 0.000
BOLL Cavia porcellus ENSCPOG00000000390 N 0.000
Boll Dipodomys ordii ENSDORG00000010791 N 0.000
BOLL Erinaceus europaeus ENSEEUG00000003441 N 0.000
BOLL Echinops telfairi ENSETEG00000013582 N 0.000
BOLL Homo sapiens ENSG00000152430 N 0.000
BOLL Gallus gallus ENSGALG00000008116 N 0.000
BOLL Gorilla gorilla ENSGGOG00000013594 N 0.000
BOLL Loxodonta africana ENSLAFG00000010956 N 0.000
BOLL Macropus eugenii ENSMEUG00000011305 N 0.000
ENSMGAG00000007162 Meleagris gallopavo ENSMGAG00000007162 N 0.000
BOLL Microcebus murinus ENSMICG00000011845 N 0.000
BOLL Myotis lucifugus ENSMLUG00000004999 N 0.000
BOLL Macaca mulatta ENSMMUG00000023811 N 0.000
BOLL Monodelphis domestica ENSMODG00000012323 N 0.000
Boll Mus musculus ENSMUSG00000025977 N 0.000
ox_plat1_152522.152522 Ornithorhynchus anatinus ENSOANG00000019928 N 0.000
BOLL Oryctolagus cuniculus ENSOCUG00000013979 N 0.000
BOLL Otolemur garnettii ENSOGAG00000007207 N 0.000
BOLL Ochotona princeps ENSOPRG00000013693 N 0.000
ENSPPYG00000013050 Pongo pygmaeus ENSPPYG00000013050 N 0.000
BOLL Pan troglodytes ENSPTRG00000012777 N 0.000
Boll Rattus norvegicus ENSRNOG00000015798 N 0.000
BOLL Sus scrofa ENSSSCG00000016082 N 0.000
BOLL Spermophilus tridecemlineatus ENSSTOG00000003536 N 0.000
BOLL Tupaia belangeri ENSTBEG00000017343 N 0.000
BOLL Taeniopygia guttata ENSTGUG00000010496 N 0.000