RBM42 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000002905 T41403_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		1.000
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000003129 RRM 351 421

Links

Other RRM family RBPs
Other Sus scrofa RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29680.m001693 Ricinus communis 29680.m001693 I 0.775
76581 Helobdella robusta 76581 I 0.718
A2VDB3 Xenopus laevis A2VDB3 I 0.944
AAEL010642 Aedes aegypti AAEL010642 I 0.761
AAI29577 Xenopus laevis AAI29577 I 0.901
AAI29698 Xenopus laevis AAI29698 I 0.944
AGAP010200 Anopheles gambiae AGAP010200 I 0.746
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.732
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 1.000
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.732
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.761
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.718
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.761
Bm1_40380 Brugia malayi Bm1_40380 I 0.732
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.775
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.732
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.775
CBG21313 Caenorhabditis briggsae CBG21313 I 0.732
CBN12017 Caenorhabditis brenneri CBN12017 I 0.732
CJA09414 Caenorhabditis japonica CJA09414 I 0.718
CRE29329 Caenorhabditis remanei CRE29329 I 0.732
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.761
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.972
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 1.000
RBM42 Canis familiaris ENSCAFG00000006925 I 1.000
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.789
RBM42 Callithrix jacchus ENSCJAG00000010220 I 1.000
RBM42 Cavia porcellus ENSCPOG00000012365 I 1.000
rbm42 Danio rerio ENSDARG00000039910 I 0.944
LOC100051102 Equus caballus ENSECAG00000018215 I 1.000
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 1.000
RBM42 Echinops telfairi ENSETEG00000007878 I 0.817
RBM42 Felis catus ENSFCAG00000006376 I 0.859
RBM42 Homo sapiens ENSG00000126254 D 1.000
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.958
RBM42 Gorilla gorilla ENSGGOG00000009972 I 1.000
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.887
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.887
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 1.000
RBM42 Microcebus murinus ENSMICG00000009880 I 1.000
RBM42 Myotis lucifugus ENSMLUG00000011334 I 1.000
RBM42 Macaca mulatta ENSMMUG00000018954 I 1.000
RBM42 Monodelphis domestica ENSMODG00000013957 I 1.000
Rbm42 Mus musculus ENSMUSG00000036733 I 1.000
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 1.000
RBM42 Otolemur garnettii ENSOGAG00000004144 I 1.000
RBM42 Ochotona princeps ENSOPRG00000001229 I 1.000
RBM42 Oryzias latipes ENSORLG00000003387 I 0.958
RBM42 Procavia capensis ENSPCAG00000013053 I 1.000
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 1.000
RBM42 Pan troglodytes ENSPTRG00000010852 I 1.000
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 1.000
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 1.000
RBM42 Sorex araneus ENSSARG00000010724 I 1.000
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 1.000
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.958
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.958
RBM42 Tarsius syrichta ENSTSYG00000014688 I 1.000
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.958
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.873
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.873
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.761
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.704
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.718
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.761
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.789
CG2931 Drosophila melanogaster FBgn0037342 D 0.704
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.718
GF11626 Drosophila ananassae FBgn0088666 I 0.704
GH22277 Drosophila grimshawi FBgn0129737 I 0.718
GL22151 Drosophila persimilis FBgn0159743 I 0.718
GM10617 Drosophila sechellia FBgn0165563 I 0.704
GJ22705 Drosophila virilis FBgn0209809 I 0.718
GK12952 Drosophila willistoni FBgn0214961 I 0.718
GE24162 Drosophila yakuba FBgn0241294 I 0.704
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.761
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.775
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.746
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.775
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.761
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.746
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.746
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.761
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.708
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.746
LOAG_04208 Loa loa LOAG_04208 I 0.732
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.704
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.761
MDP0000283678 Malus x domestica MDP0000283678 I 0.761
MDP0000320908 Malus x domestica MDP0000320908 I 0.761
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.732
mgf018525m Mimulus guttatus mgf018525m I 0.704
mgf021739m Mimulus guttatus mgf021739m I 0.761
Minc13155 Meloidogyne incognita Minc13155 I 0.718
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.746
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.746
PHUM106890 Pediculus humanus PHUM106890 I 0.746
PK16312.1 Cannabis sativa PK16312.1 I 0.775
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.746
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.761
ppa010477m Prunus persica ppa010477m I 0.761
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.704
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.704
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.761
SB04G026430 Sorghum bicolor Sb04g026430 I 0.732
SNAPOd2T00026674001 Oikopleura dioica SNAPOd2T00026674001 N 0.712
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.761
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.732
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.775
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.732