29868.m000351 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29868.m000351 T48700_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29868.m000351 RRM 21 88

Links

Other RRM family RBPs
Other Ricinus communis RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
1600010087 Ostreococcus tauri 1600010087 N 0.765
68671 Helobdella robusta 68671 N 0.721
AAEL005909 Aedes aegypti AAEL005909 N 0.794
AAH57709 Xenopus laevis AAH57709 N 0.735
AGAP002780 Anopheles gambiae AGAP002780 N 0.794
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.779
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.779
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.750
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.779
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.941
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.706
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 1.000
CBN08400 Caenorhabditis brenneri CBN08400 N 0.706
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.942
CJA01433 Caenorhabditis japonica CJA01433 N 0.721
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.794
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.794
CRE22109 Caenorhabditis remanei CRE22109 N 0.706
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.706
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.794
EDO06533.1 Babesia bovis EDO06533.1 N 0.735
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.750
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.750
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.750
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.750
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.000
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.779
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.750
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.750
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.779
sf3b14 Danio rerio ENSDARG00000009753 N 0.750
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.750
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.750
LOC100056247 Equus caballus ENSECAG00000015618 N 0.750
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.750
AC008073.5 Homo sapiens ENSG00000115128 N 0.750
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.750
SF3B14 Gallus gallus ENSGALG00000016501 N 0.750
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.750
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.750
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.750
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.750
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.735
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.750
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.750
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.750
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.735
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.750
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.750
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.750
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.750
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.750
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.750
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.750
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.765
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.765
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.750
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.750
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.750
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.750
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.797
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.779
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.765
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.735
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.956
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.897
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.000
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.897
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.765
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.765
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.812
CG13298 Drosophila melanogaster FBgn0035692 N 0.768
GE20495 Drosophila yakuba FBgn0068445 N 0.768
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.768
GF10910 Drosophila ananassae FBgn0087950 N 0.768
GG14070 Drosophila erecta FBgn0106332 N 0.768
GH16287 Drosophila grimshawi FBgn0123758 N 0.768
GI13232 Drosophila mojavensis FBgn0135989 N 0.768
GL22529 Drosophila persimilis FBgn0160121 N 0.768
GM13852 Drosophila sechellia FBgn0168783 N 0.768
GD13137 Drosophila simulans FBgn0184859 N 0.768
GJ12004 Drosophila virilis FBgn0199256 N 0.768
GK17258 Drosophila willistoni FBgn0219257 N 0.768
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.000
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.768
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.942
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.971
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.000
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 1.000
ISCW024082 Ixodes scapularis ISCW024082 N 0.809
LOAG_04189 Loa loa LOAG_04189 N 0.739
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.941
MDP0000185506 Malus x domestica MDP0000185506 N 1.000
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.942
mgf016428m Mimulus guttatus mgf016428m N 0.928
Minc01156 Meloidogyne incognita Minc01156 N 0.735
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.779
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.779
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.725
PHUM617060 Pediculus humanus PHUM617060 N 0.809
PK21780.1 Cannabis sativa PK21780.1 N 1.000
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 1.000
ppa013405m Prunus persica ppa013405m N 1.000
ppa013407m Prunus persica ppa013407m N 1.000
PPA24922 Pristionchus pacificus PPA24922 N 0.721
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.725
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.765
Smp_032060 Schistosoma mansoni Smp_032060 N 0.765
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.706
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.868
TA13725 Theileria annulata TA13725 N 0.721
TP02_0539 Theileria parva TP02_0539 N 0.000
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.765