Glyma13g08170.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma13g08170.1 T52822_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma13g08170.1 RRM 20 78
Glyma13g08170.1 RRM 124 181
Glyma13g08170.1 RRM 249 311

Links

Other RRM family RBPs
Other Glycine max RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.777
30169.m006527 Ricinus communis 30169.m006527 I 0.950
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.769
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.906
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.703
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.729
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.773
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.755
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.928
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.794
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.933
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.933
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.777
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.944
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.786
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.793
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.917
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.967
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.972
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.772
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.978
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.777
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.787
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.769
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.772
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.933
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.793
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.773
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.734
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.780
MDP0000236223 Malus x domestica MDP0000236223 N 0.839
MDP0000269393 Malus x domestica MDP0000269393 I 0.911
MDP0000274672 Malus x domestica MDP0000274672 N 0.806
MDP0000796160 Malus x domestica MDP0000796160 I 0.746
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.950
mgf001230m Mimulus guttatus mgf001230m I 0.858
mgf005649m Mimulus guttatus mgf005649m I 0.896
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.814
PK14390.1 Cannabis sativa PK14390.1 I 0.762
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.762
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.741
ppa004961m Prunus persica ppa004961m I 0.762
ppa005791m Prunus persica ppa005791m I 0.956
SB01G034060 Sorghum bicolor Sb01g034060 I 0.720
SB03G028150 Sorghum bicolor Sb03g028150 I 0.791
SB07G021250 Sorghum bicolor Sb07g021250 I 0.769
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.778