gw1.9.516.1 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.9.516.1 T53413_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.9.516.1 RRM 58 127

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
156918 Helobdella robusta 156918 I 0.761
AAEL015143 Aedes aegypti AAEL015143 I 0.704
AAG36902 Xenopus laevis AAG36902 I 0.803
AAH45063 Xenopus laevis AAH45063 I 0.803
AAH73657 Xenopus laevis AAH73657 I 0.803
AAR26262 Xenopus laevis AAR26262 I 0.803
AGAP005117 Anopheles gambiae AGAP005117 I 0.704
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.789
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.789
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.800
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.831
Bm1_48895 Brugia malayi Bm1_48895 I 0.829
pabp-2 Caenorhabditis elegans C17E4.5 I 0.718
CBG03741 Caenorhabditis briggsae CBG03741 I 0.761
CBN00953 Caenorhabditis brenneri CBN00953 I 0.761
CBN10290 Caenorhabditis brenneri CBN10290 I 0.761
CBN16301 Caenorhabditis brenneri CBN16301 I 0.746
CJA15148 Caenorhabditis japonica CJA15148 I 0.761
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.704
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.704
CRE07990 Caenorhabditis remanei CRE07990 I 0.761
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.859
EDP44971.1 Malassezia globosa EDP44971.1 N 0.704
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.789
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.704
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.789
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.789
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.789
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.786
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.789
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.789
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.771
pabpn1 Danio rerio ENSDARG00000045373 I 0.871
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.789
LOC100055599 Equus caballus ENSECAG00000011652 I 0.789
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.761
PABPN1 Homo sapiens ENSG00000100836 D 0.789
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.857
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.789
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.789
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.775
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.704
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.789
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.704
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.831
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.789
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.803
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.704
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.761
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.789
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.714
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.789
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.857
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.789
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.789
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.789
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.789
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.789
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.857
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.704
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.857
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.789
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.789
estExt_fgenesh2_pm.C_40328 Serpula lacrymans estExt_fgenesh2_pm.C_40328 N 0.729
estExt_fgenesh3_pg.C_140127 Postia placenta estExt_fgenesh3_pg.C_140127 N 0.714
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.817
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.803
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.843
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.831
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.873
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.704
e_gw1.4.778.1 Heterobasidion annosum e_gw1.4.778.1 N 0.714
e_gwh2.2.847.1 Phanerochaete chrysosporium e_gwh2.2.847.1 I 0.743
Pabp2 Drosophila melanogaster FBgn0005648 I 0.704
Pabp2 Drosophila yakuba FBgn0068105 I 0.704
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.704
GF13666 Drosophila ananassae FBgn0090694 I 0.704
GG23338 Drosophila erecta FBgn0115489 I 0.704
GH21908 Drosophila grimshawi FBgn0129369 I 0.704
GI19259 Drosophila mojavensis FBgn0141998 I 0.704
GM21011 Drosophila sechellia FBgn0175892 I 0.704
GD10545 Drosophila simulans FBgn0182316 I 0.704
GJ22134 Drosophila virilis FBgn0209248 I 0.704
GK23192 Drosophila willistoni FBgn0225154 I 0.704
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.929
gww1.2.642.1 Laccaria bicolor gww1.2.642.1 N 0.718
LOAG_03634 Loa loa LOAG_03634 I 0.829
PGTG_01300 Puccinia graminis PGTG_01300 N 0.704
PHUM037550 Pediculus humanus PHUM037550 I 0.817
PPA11675 Pristionchus pacificus PPA11675 I 0.729
PTTG_05043 Puccinia triticina PTTG_05043 N 0.704
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.803
Q9DDY9 Xenopus laevis Q9DDY9 I 0.803
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.704
Smp_007630 Schistosoma mansoni Smp_007630 I 0.704
UM02401 Ustilago maydis UM02401 N 0.718
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.829
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.817
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.814