PDK_20s1513061g004 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1513061g004 T58174_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.830
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1513061g004 RRM 20 78
PDK_20s1513061g004 RRM 117 182
PDK_20s1513061g004 RRM 257 319

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.804
30169.m006527 Ricinus communis 30169.m006527 I 0.824
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.787
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.793
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.707
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.715
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.751
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.782
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.741
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.809
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.820
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.819
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.819
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.804
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.824
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.819
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.830
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.803
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.819
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.824
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.804
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.814
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.830
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.804
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.788
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.750
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.810
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.835
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.830
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.787
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.757
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.766
MDP0000236223 Malus x domestica MDP0000236223 N 0.729
MDP0000269393 Malus x domestica MDP0000269393 I 0.782
MDP0000274672 Malus x domestica MDP0000274672 N 0.702
MDP0000796160 Malus x domestica MDP0000796160 I 0.788
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.809
mgf001230m Mimulus guttatus mgf001230m I 0.761
mgf005649m Mimulus guttatus mgf005649m I 0.793
PK14390.1 Cannabis sativa PK14390.1 I 0.804
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.810
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.772
ppa004961m Prunus persica ppa004961m I 0.799
ppa005791m Prunus persica ppa005791m I 0.819
SB01G034060 Sorghum bicolor Sb01g034060 I 0.741
SB03G028150 Sorghum bicolor Sb03g028150 I 0.798
SB07G021250 Sorghum bicolor Sb07g021250 I 0.750
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.798