CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZFP36L2
(
Choloepus hoffmanni
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSCHOG00000005595
T02322_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000004955
CCCH ZF
122
148
YKTELCRPSEESVTCKYNKKCMFAHGY
ENSCHOP00000004955
CCCH ZF
160
185
YKTEVSRTFHTIGFCPYRPRRHFIHR
Links
Other
CCCH ZF
family RBPs
Other
Choloepus hoffmanni
RBPs
93 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.000
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.000
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.000
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.000
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.000
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.000
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.000
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.000
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.000
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.000
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.000
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.000
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.000
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.000
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.000
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.000
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.000
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.000
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.000
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.000
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.000
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.000
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.000
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.000
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.000
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.000
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.000
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.000
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.000
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.000
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.000
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.000
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.000
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.000
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.000
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.000
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.000
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.000
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.000
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.000
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.000
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.000
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.000
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.000
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.000
Sjc_0086280
Schistosoma japonicum
Sjc_0086280
N
0.000
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.000
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.000
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.000
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.000
Smp_040460
Schistosoma mansoni
Smp_040460
N
0.000
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.000
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.000
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.000
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.000
AAH60445
Xenopus laevis
AAH60445
N
0.000
AAH68959
Xenopus laevis
AAH68959
N
0.000
AAH78013
Xenopus laevis
AAH78013
N
0.000
62837
Helobdella robusta
62837
N
0.000
152141
Helobdella robusta
152141
N
0.000
PHUM167190
Pediculus humanus
PHUM167190
N
0.000
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.000
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.000
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.000
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.000
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.000
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.000
CG6422
Drosophila melanogaster
FBgn0039261
N
0.000
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.000
GF18592
Drosophila ananassae
FBgn0095610
N
0.000
GG12295
Drosophila erecta
FBgn0104586
N
0.000
GH22368
Drosophila grimshawi
FBgn0129826
N
0.000
GL21952
Drosophila persimilis
FBgn0159545
N
0.000
GM17761
Drosophila sechellia
FBgn0172669
N
0.000
GD18245
Drosophila simulans
FBgn0189779
N
0.000
GJ14120
Drosophila virilis
FBgn0201338
N
0.000
GK12904
Drosophila willistoni
FBgn0214913
N
0.000
GE10748
Drosophila yakuba
FBgn0228591
N
0.000
AAH81017
Xenopus laevis
AAH81017
N
0.000
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.000
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.000
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.000
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.000
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.000
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.000
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.000
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.000
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.000
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.000
yth2
Danio rerio
ENSDARG00000014498
N
0.000
ythdf1
Danio rerio
ENSDARG00000016447
N
0.000
ythdf3
Danio rerio
ENSDARG00000057939
N
0.000
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.000
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.000
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.000
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.000
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.000
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.000
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.000
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.000
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.000
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.000
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.000
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.000
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.000
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.000
AAEL005544
Aedes aegypti
AAEL005544
N
0.000
AGAP003817
Anopheles gambiae
AGAP003817
N
0.000
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.000
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.000
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.000
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.000
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.000
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.000
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.000
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.000
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.000
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.000
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.000
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.000
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.000
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.000
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.000
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.000
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.000
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.000
ENSMLUG00000006541
Myotis lucifugus
ENSMLUG00000006541
N
0.000
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.000
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.000
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.000
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.000
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.000
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.000
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.000
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.000
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.000
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.000
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.000
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.000
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.000
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.000
YTHDF1
Homo sapiens
ENSG00000149658
N
0.000
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.000
YTHDF2
Homo sapiens
ENSG00000198492
N
0.000
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.000
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.000
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.000
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.000
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.000
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.000
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.000
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.000
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.000
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.000
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.000
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.000
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.000
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.000
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.000