ENSCJAG00000035120 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000035120 T16796_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.930
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.930
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.861
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.861
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.861
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.847
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000045084 CSD 63 133

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

183 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YB-1 Homo sapiens ENSG00000065978 D 0.930
ybx2-a Xenopus laevis AAI69706 D 0.887
YBX2 Homo sapiens ENSG00000006047 D 0.873
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.930
Csda Rattus norvegicus ENSRNOG00000005480 I 0.930
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.901
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.764
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.887
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.915
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.873
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.930
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.873
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.806
YBX2 Sorex araneus ENSSARG00000000488 I 0.873
CSDA Sus scrofa ENSSSCG00000000633 I 0.930
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.930
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.873
Ybx2 Mus musculus ENSMUSG00000018554 I 0.887
Ybx1 Mus musculus ENSMUSG00000028639 I 0.930
Csda Mus musculus ENSMUSG00000030189 I 0.930
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.930
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.930
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.887
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.930
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.781
CSDA Procavia capensis ENSPCAG00000001397 I 0.859
YBX2 Procavia capensis ENSPCAG00000008019 I 0.887
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.930
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.930
CSDA Pan troglodytes ENSPTRG00000004681 I 0.930
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.873
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.792
YBX2 Sus scrofa ENSSSCG00000017938 I 0.887
AAA49716 Xenopus laevis AAA49716 I 0.887
AAA49924 Xenopus laevis AAA49924 I 0.873
AAH41191 Xenopus laevis AAH41191 I 0.930
AAH42217 Xenopus laevis AAH42217 I 0.930
AAI06324 Xenopus laevis AAI06324 I 0.930
AAI30161 Xenopus laevis AAI30161 I 0.930
AAI55914 Xenopus laevis AAI55914 I 0.873
AAI55915 Xenopus laevis AAI55915 I 0.887
AAI69704 Xenopus laevis AAI69704 I 0.887
CAA42778 Xenopus laevis CAA42778 I 0.930
P21573 Xenopus laevis P21573 I 0.930
P21574 Xenopus laevis P21574 I 0.887
P45441 Xenopus laevis P45441 I 0.873
AAA49715 Xenopus laevis AAA49715 I 0.930
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.806
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.930
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.887
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.930
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.930
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.930
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.930
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.930
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.803
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.930
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.930
csda Xenopus tropicalis ENSXETG00000016239 I 0.887
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.859
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.806
Q00436 Xenopus laevis Q00436 I 0.930
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.901
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.847
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.833
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.930
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.792
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.887
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.931
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.887
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.930
CSDA Cavia porcellus ENSCPOG00000011329 I 0.930
ybx1 Danio rerio ENSDARG00000004757 I 0.930
Csda Dipodomys ordii ENSDORG00000009103 I 0.930
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.930
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.887
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.901
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.887
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.930
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.930
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.873
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.930
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.792
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.915
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.930
YBX2 Canis familiaris ENSCAFG00000016128 I 0.887
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.930
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.736
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.930
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.806
LOC100072964 Equus caballus ENSECAG00000009996 I 0.887
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.915
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.887
CSDA Loxodonta africana ENSLAFG00000017247 I 0.930
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.930
YBX1 Microcebus murinus ENSMICG00000014984 I 0.930
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.833
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.901
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.930
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.930
CSDA Macaca mulatta ENSMMUG00000022469 I 0.930
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.887
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.915
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.930
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.873
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.930
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.901
LOC100065107 Equus caballus ENSECAG00000013777 I 0.930
LOC100067336 Equus caballus ENSECAG00000023592 I 0.930
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.930
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.873
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.930
CSDA Echinops telfairi ENSETEG00000002557 I 0.930
CSDA Homo sapiens ENSG00000060138 I 0.930
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.930
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.781
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.930
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.930
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.930
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.873
CSDA Monodelphis domestica ENSMODG00000018248 I 0.915