Q90WH1_ORYLA (Oryzias latipes)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSORLG00000006269 T16966_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.877
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.877
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.877
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.875
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.875
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.836
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000007874 CSD 29 99
ENSORLP00000007879 CSD 2 72

Links

Other CSD family RBPs
Other Oryzias latipes RBPs

189 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YB-1 Homo sapiens ENSG00000065978 D 0.849
ybx2-a Xenopus laevis AAI69706 D 0.877
YBX2 Homo sapiens ENSG00000006047 D 0.836
GH16919 Drosophila grimshawi FBgn0124390 I 0.764
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.958
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.849
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.944
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.849
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.849
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.849
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.849
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.849
YBX2 Sus scrofa ENSSSCG00000017938 I 0.849
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.849
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.708
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.764
GF10852 Drosophila ananassae FBgn0087892 I 0.778
yps Drosophila melanogaster FBgn0022959 I 0.764
cey-1 Caenorhabditis elegans F33A8.3 I 0.708
csda Xenopus tropicalis ENSXETG00000016239 I 0.863
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.849
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.000
CSDA Vicugna pacos ENSVPAG00000000876 I 0.726
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.849
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.736
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.764
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.722
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.849
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.849
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.836
CSDA Pan troglodytes ENSPTRG00000004681 I 0.849
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.849
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.849
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.000
YBX2 Procavia capensis ENSPCAG00000008019 I 0.849
CSDA Procavia capensis ENSPCAG00000001397 I 0.781
YBX2 Oryzias latipes ENSORLG00000018683 I 0.764
Csda Rattus norvegicus ENSRNOG00000005480 I 0.849
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.822
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.708
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.808
CSDA Sus scrofa ENSSSCG00000000633 I 0.849
YBX1 Sorex araneus ENSSARG00000012628 I 0.000
YBX2 Sorex araneus ENSSARG00000000488 I 0.836
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.792
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.000
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.795
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.849
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.836
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.849
Q00436 Xenopus laevis Q00436 I 0.849
AAA49715 Xenopus laevis AAA49715 I 0.849
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.792
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.792
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.792
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.792
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.708
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.764
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.764
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.750
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.819
AAA49716 Xenopus laevis AAA49716 I 0.877
AAA49924 Xenopus laevis AAA49924 I 0.863
AAH41191 Xenopus laevis AAH41191 I 0.849
P45441 Xenopus laevis P45441 I 0.863
P21574 Xenopus laevis P21574 I 0.877
P21573 Xenopus laevis P21573 I 0.849
CAA42778 Xenopus laevis CAA42778 I 0.849
AAI69704 Xenopus laevis AAI69704 I 0.877
AAI55915 Xenopus laevis AAI55915 I 0.877
AAI55914 Xenopus laevis AAI55914 I 0.863
AAI30161 Xenopus laevis AAI30161 I 0.849
AAI06324 Xenopus laevis AAI06324 I 0.849
AAH42217 Xenopus laevis AAH42217 I 0.849
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.750
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.750
PHUM156720 Pediculus humanus PHUM156720 I 0.792
PHUM156710 Pediculus humanus PHUM156710 I 0.806
ISCW005281 Ixodes scapularis ISCW005281 I 0.750
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.778
GE20150 Drosophila yakuba FBgn0237472 I 0.764
GK16710 Drosophila willistoni FBgn0218712 I 0.778
GJ14010 Drosophila virilis FBgn0201228 I 0.764
GD12750 Drosophila simulans FBgn0184477 I 0.764
GM24682 Drosophila sechellia FBgn0179545 I 0.764
GL15684 Drosophila persimilis FBgn0153288 I 0.778
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.736
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.792
133388 Helobdella robusta 133388 I 0.722
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.778
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.722
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.819
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.736
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.764
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.849
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.764
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.750
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.736
146547 Helobdella robusta 146547 I 0.000
GI13673 Drosophila mojavensis FBgn0136428 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.849
LOC100072964 Equus caballus ENSECAG00000009996 I 0.849
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.712
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.778
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.849
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.778
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.722
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.849
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.836
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.806
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.849
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.708
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.795
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.806
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.781
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.849
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.736
Csda Dipodomys ordii ENSDORG00000009103 I 0.849
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.722
ybx1 Danio rerio ENSDARG00000004757 I 0.849
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.767
CSDA Cavia porcellus ENSCPOG00000011329 I 0.849
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.849
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.849
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.708
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.753
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.849
CRE01789 Caenorhabditis remanei CRE01789 I 0.708
CBN16711 Caenorhabditis brenneri CBN16711 I 0.708
CBG02981 Caenorhabditis briggsae CBG02981 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.722
AAEL001375 Aedes aegypti AAEL001375 I 0.736
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.764
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.806
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.806
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.806
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.750
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.836
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.849
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.849
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.722
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.722
YBX2 Canis familiaris ENSCAFG00000016128 I 0.849
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.849
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.836
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.750
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.770
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.849
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.795
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.849
Bm1_57515 Brugia malayi Bm1_57515 I 0.750
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.849
CSDA Monodelphis domestica ENSMODG00000018248 I 0.849
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.836
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.849
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.836
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.849
CSDA Macaca mulatta ENSMMUG00000022469 I 0.849
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.849
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.849
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.822
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.847
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.836
Ybx2 Mus musculus ENSMUSG00000018554 I 0.849
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.722
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.722
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.000
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.000
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.849
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.849
Csda Mus musculus ENSMUSG00000030189 I 0.849
Ybx1 Mus musculus ENSMUSG00000028639 I 0.849
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.778
YBX1 Microcebus murinus ENSMICG00000014984 I 0.849
YBX2 Microcebus murinus ENSMICG00000012453 I 0.000
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.986
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.849
CSDA Homo sapiens ENSG00000060138 I 0.849
YBX2 Echinops telfairi ENSETEG00000014271 I 0.736
CSDA Echinops telfairi ENSETEG00000002557 I 0.849
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.849
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.795
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.849
LOC100067336 Equus caballus ENSECAG00000023592 I 0.849
LOC100065107 Equus caballus ENSECAG00000013777 I 0.849
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.849
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.849
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.849
CSDA Microcebus murinus ENSMICG00000004602 I 0.726
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.849
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.708
CSDA Loxodonta africana ENSLAFG00000017247 I 0.849
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.849
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.849
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.822
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.836
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.000
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.836
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.000