XP_002154000.1 (Hydra magnipapillata)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 XP_002154000.1 T17402_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.873
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.873
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.819
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.819
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.819
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_002154000.1 CSD 446 516

Links

Other CSD family RBPs
Other Hydra magnipapillata RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ybx2-a Xenopus laevis AAI69706 D 0.833
YB-1 Homo sapiens ENSG00000065978 D 0.861
YBX2 Homo sapiens ENSG00000006047 D 0.819
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.861
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.861
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.778
csda Xenopus tropicalis ENSXETG00000016239 I 0.833
cey-1 Caenorhabditis elegans F33A8.3 I 0.746
yps Drosophila melanogaster FBgn0022959 I 0.761
GF10852 Drosophila ananassae FBgn0087892 I 0.761
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.861
GI13673 Drosophila mojavensis FBgn0136428 I 0.761
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.761
GE20150 Drosophila yakuba FBgn0237472 I 0.761
GK16710 Drosophila willistoni FBgn0218712 I 0.761
GJ14010 Drosophila virilis FBgn0201228 I 0.761
GH16919 Drosophila grimshawi FBgn0124390 I 0.761
GD12750 Drosophila simulans FBgn0184477 I 0.761
GM24682 Drosophila sechellia FBgn0179545 I 0.761
GL15684 Drosophila persimilis FBgn0153288 I 0.761
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.861
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.778
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.861
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.861
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.847
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.819
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.847
CSDA Pan troglodytes ENSPTRG00000004681 I 0.861
Csda Rattus norvegicus ENSRNOG00000005480 I 0.861
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.861
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.861
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.819
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.789
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.861
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.861
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.819
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.861
YBX2 Sus scrofa ENSSSCG00000017938 I 0.819
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.806
CSDA Sus scrofa ENSSSCG00000000633 I 0.861
YBX2 Sorex araneus ENSSARG00000000488 I 0.806
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.819
ISCW005281 Ixodes scapularis ISCW005281 I 0.761
Q00436 Xenopus laevis Q00436 I 0.861
AAH41191 Xenopus laevis AAH41191 I 0.861
AAA49924 Xenopus laevis AAA49924 I 0.819
AAA49716 Xenopus laevis AAA49716 I 0.833
AAA49715 Xenopus laevis AAA49715 I 0.861
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.803
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 1.000
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.803
AAH42217 Xenopus laevis AAH42217 I 0.861
AAI06324 Xenopus laevis AAI06324 I 0.861
P45441 Xenopus laevis P45441 I 0.819
P21574 Xenopus laevis P21574 I 0.833
P21573 Xenopus laevis P21573 I 0.861
CAA42778 Xenopus laevis CAA42778 I 0.861
AAI69704 Xenopus laevis AAI69704 I 0.833
AAI55915 Xenopus laevis AAI55915 I 0.833
AAI55914 Xenopus laevis AAI55914 I 0.819
AAI30161 Xenopus laevis AAI30161 I 0.861
Minc12652 Meloidogyne incognita Minc12652 I 0.704
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.761
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.761
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.775
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.775
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.746
146547 Helobdella robusta 146547 I 0.704
133388 Helobdella robusta 133388 I 0.718
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.817
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.761
PHUM156720 Pediculus humanus PHUM156720 I 0.789
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.819
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.775
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.761
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.775
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.775
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.775
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.803
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.859
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.775
PHUM156710 Pediculus humanus PHUM156710 I 0.789
LOC100065107 Equus caballus ENSECAG00000013777 I 0.861
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.806
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.861
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.819
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.847
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.861
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.764
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.861
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.775
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.803
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.819
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.847
LOC100072964 Equus caballus ENSECAG00000009996 I 0.819
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.861
Csda Dipodomys ordii ENSDORG00000009103 I 0.861
ybx1 Danio rerio ENSDARG00000004757 I 0.861
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.778
CSDA Cavia porcellus ENSCPOG00000011329 I 0.861
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.861
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.775
YBX2 Canis familiaris ENSCAFG00000016128 I 0.819
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.861
CBG02981 Caenorhabditis briggsae CBG02981 I 0.746
AGAP006108 Anopheles gambiae AGAP006108 I 0.746
AAEL001375 Aedes aegypti AAEL001375 I 0.746
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.789
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.803
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.803
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.803
LOAG_11791 Loa loa LOAG_11791 I 0.704
CBN16711 Caenorhabditis brenneri CBN16711 I 0.761
CJA05984 Caenorhabditis japonica CJA05984 I 0.732
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.847
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.861
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.806
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.861
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.861
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.819
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.847
CRE01789 Caenorhabditis remanei CRE01789 I 0.761
Bm1_57515 Brugia malayi Bm1_57515 I 0.775
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.861
Ybx2 Mus musculus ENSMUSG00000018554 I 0.819
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.833
CSDA Monodelphis domestica ENSMODG00000018248 I 0.847
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.806
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.861
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.847
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.819
CSDA Macaca mulatta ENSMMUG00000022469 I 0.861
Ybx1 Mus musculus ENSMUSG00000028639 I 0.861
Csda Mus musculus ENSMUSG00000030189 I 0.861
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.861
YBX2 Procavia capensis ENSPCAG00000008019 I 0.819
CSDA Procavia capensis ENSPCAG00000001397 I 0.792
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.792
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.861
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.819
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.861
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.861
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.861
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.861
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.833
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.861
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.792
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.861
CSDA Homo sapiens ENSG00000060138 I 0.861
CSDA Echinops telfairi ENSETEG00000002557 I 0.861
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.861
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.819
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.861
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.861
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.861
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.789
YBX1 Microcebus murinus ENSMICG00000014984 I 0.861
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.861
CSDA Loxodonta africana ENSLAFG00000017247 I 0.861
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.819
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.861
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.833
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.819
LOC100067336 Equus caballus ENSECAG00000023592 I 0.861