cassava9350.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava9350.m1 T24708_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava9350.m1 PUF 703 737
cassava9350.m1 PUF 739 773
cassava9350.m1 PUF 775 809
cassava9350.m1 PUF 811 845
cassava9350.m1 PUF 848 881
cassava9350.m1 PUF 884 918
cassava9350.m1 PUF 920 954
cassava9350.m1 PUF 962 996

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK11972.1 Cannabis sativa PK11972.1 N 0.789
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.705
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.770
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.762
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.759
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.712
mgf002285m Mimulus guttatus mgf002285m N 0.720
mgf006786m Mimulus guttatus mgf006786m N 0.811
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.744
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.732
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.716
MDP0000265231 Malus x domestica MDP0000265231 N 0.791
MDP0000277305 Malus x domestica MDP0000277305 N 0.836
MDP0000313902 Malus x domestica MDP0000313902 N 0.811
ppa000898m Prunus persica ppa000898m N 0.787
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.807
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.758
PK12245.1 Cannabis sativa PK12245.1 N 0.777
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.761
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.715
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.758
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.715
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.736
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.826
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.791
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.715
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.758
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.854
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.747
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.740
30169.m006300 Ricinus communis 30169.m006300 N 0.928
ppa016404m Prunus persica ppa016404m N 0.815