cassava9350.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava9350.m1 T24708_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava9350.m1 PUF 703 737
cassava9350.m1 PUF 739 773
cassava9350.m1 PUF 775 809
cassava9350.m1 PUF 811 845
cassava9350.m1 PUF 848 881
cassava9350.m1 PUF 884 918
cassava9350.m1 PUF 920 954
cassava9350.m1 PUF 962 996

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RS31a Arabidopsis thaliana AT2G46610-TAIR-G N 0.000
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.000
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.000
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.000
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.000
mgf011722m Mimulus guttatus mgf011722m N 0.000
GRMZM2G021223 Zea mays GRMZM2G021223 N 0.000
GRMZM2G052166 Zea mays GRMZM2G052166 N 0.000
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.000
MDP0000263938 Malus x domestica MDP0000263938 N 0.000
MDP0000387508 Malus x domestica MDP0000387508 N 0.000
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.000
29742.m001371 Ricinus communis 29742.m001371 N 0.000
BGIOSIBCE005422 Oryza indica BGIOSIBCE005422 N 0.000
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.000
BRADI5G01430 Brachypodium distachyon BRADI5G01430 N 0.000
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.000
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.000
LOC_Os02g03040 Oryza sativa LOC_Os02g03040 N 0.000
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.000
B9GR47_POPTR Populus trichocarpa POPTR_0002s17560 N 0.000
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.000
SB06G001100 Sorghum bicolor Sb06g001100 N 0.000
ppa008137m Prunus persica ppa008137m N 0.000