CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava9350.m1
(
Manihot esculenta
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
cassava9350.m1
T24708_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava9350.m1
PUF
703
737
EIAGHIVEFSVDQHGSRFIQQKLEHCSVEEKVSVF
cassava9350.m1
PUF
739
773
EVLPHASKLMTDVFGNYVIQKFFEHGSPEQRKELA
cassava9350.m1
PUF
775
809
KLSGQMLQLSLQMYGCRVIQKALEVIELDQKTQLV
cassava9350.m1
PUF
811
845
ELDGHVMRCVHDQNGNHVIQKCIECVPTKNIEFII
cassava9350.m1
PUF
848
881
FRGQVAALATHPYGCRVIQRVLEHCSDDLQSQCI
cassava9350.m1
PUF
884
918
EILESAHILAQDQYGNYVTQHVLERGKPSERSQII
cassava9350.m1
PUF
920
954
KVSGKIVQMSQHKYASNVIEKCLEYGNSAEQELLI
cassava9350.m1
PUF
962
996
EESDHLLVMMKDQFANYVVQKILEISNDKQKKILL
Links
Other
PUF
family RBPs
Other
Manihot esculenta
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RS31a
Arabidopsis thaliana
AT2G46610-TAIR-G
N
0.000
cassava43625.valid.m1
Manihot esculenta
cassava43625.valid.m1
N
0.000
Cucsa.259460
Cucumis sativus
Cucsa.259460
N
0.000
Glyma07g05900.1
Glycine max
Glyma07g05900.1
N
0.000
Glyma16g02500.1
Glycine max
Glyma16g02500.1
N
0.000
mgf011722m
Mimulus guttatus
mgf011722m
N
0.000
GRMZM2G021223
Zea mays
GRMZM2G021223
N
0.000
GRMZM2G052166
Zea mays
GRMZM2G052166
N
0.000
Medtr8g029490
Medicago truncatula
Medtr8g029490
N
0.000
MDP0000263938
Malus x domestica
MDP0000263938
N
0.000
MDP0000387508
Malus x domestica
MDP0000387508
N
0.000
cassava43624.valid.m1
Manihot esculenta
cassava43624.valid.m1
N
0.000
29742.m001371
Ricinus communis
29742.m001371
N
0.000
BGIOSIBCE005422
Oryza indica
BGIOSIBCE005422
N
0.000
BGIOSIBCE013939
Oryza indica
BGIOSIBCE013939
N
0.000
BRADI5G01430
Brachypodium distachyon
BRADI5G01430
N
0.000
XM_002882032.1
Arabidopsis lyrata
fgenesh2_kg.4__2884__AT2G46610.1
N
0.000
XM_002878371.1
Arabidopsis lyrata
fgenesh2_kg.5__2682__AT3G61860.1
N
0.000
LOC_Os02g03040
Oryza sativa
LOC_Os02g03040
N
0.000
LOC_Os04g02870
Oryza sativa
LOC_Os04g02870
N
0.000
B9GR47_POPTR
Populus trichocarpa
POPTR_0002s17560
N
0.000
B9I911_POPTR
Populus trichocarpa
POPTR_0014s09730
N
0.000
SB06G001100
Sorghum bicolor
Sb06g001100
N
0.000
ppa008137m
Prunus persica
ppa008137m
N
0.000