SRSF6 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000017888 T35654_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000033052 RRM 4 66
ENSCJAP00000033052 RRM 112 177
ENSCJAP00000033062 RRM 4 66

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.000
AFLA_061430 Aspergillus flavus CADAFLAG00006752 N 0.000
An02g05190 Aspergillus niger CADANGAG00002035 N 0.000
ATEG_08357 Aspergillus terreus CADATEAG00004925 N 0.000
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.000
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.000
PBANKA_130770 Plasmodium berghei PBANKA_130770 N 0.000
PCHAS_131090 Plasmodium chabaudi PCHAS_131090 N 0.000
PF14_0416 Plasmodium falciparum PF14_0416 N 0.000
PY01907 Plasmodium yoelii PY01907 N 0.000
e_gw1.32.54.1 Fragilariopsis cylindrus e_gw1.32.54.1 N 0.000
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.000
EAT76222.1 Phaeosphaeria nodorum EAT76222.1 N 0.000
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.000
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.000
VDAG_02435 Verticillium dahliae VDAG_02435 N 0.000
TRV_01821 Trichophyton verrucosum TRV_01821 N 0.000
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.000
ARB_03970 Arthroderma benhamiae ARB_03970 N 0.000
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.000
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.000
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.000
MCYG_07006 Microsporum canis MCYG_07006 N 0.000
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.000
MGYG_03604 Microsporum gypseum MGYG_03604 N 0.000
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.000
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.000
SNOG_16397 Stagonospora nodorum SNOG_16397 N 0.000
TEQG_05573 Trichophyton equinum TEQG_05573 N 0.000
TERG_03941 Trichophyton rubrum TERG_03941 N 0.000
TESG_00049 Trichophyton tonsurans TESG_00049 N 0.000
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.000