pabpn1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000045373 T36161_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.943
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000066721 RRM 100 169
ENSDARP00000100125 RRM 100 169

Links

Other RRM family RBPs
Other Danio rerio RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Homo sapiens ENSG00000100836 D 0.915
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.986
GF13666 Drosophila ananassae FBgn0090694 I 0.761
GG23338 Drosophila erecta FBgn0115489 I 0.761
GH21908 Drosophila grimshawi FBgn0129369 I 0.761
GI19259 Drosophila mojavensis FBgn0141998 I 0.761
GM21011 Drosophila sechellia FBgn0175892 I 0.761
GD10545 Drosophila simulans FBgn0182316 I 0.761
GJ22134 Drosophila virilis FBgn0209248 I 0.761
GK23192 Drosophila willistoni FBgn0225154 I 0.761
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.761
Pabp2 Drosophila yakuba FBgn0068105 I 0.761
Pabp2 Drosophila melanogaster FBgn0005648 I 0.761
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.915
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.915
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.915
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.915
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.915
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.986
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.732
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.986
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.915
PHUM037550 Pediculus humanus PHUM037550 I 0.845
PPA11675 Pristionchus pacificus PPA11675 I 0.714
156918 Helobdella robusta 156918 I 0.789
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.915
Smp_007630 Schistosoma mansoni Smp_007630 I 0.704
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.775
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.743
AAG36902 Xenopus laevis AAG36902 I 0.930
AAH45063 Xenopus laevis AAH45063 I 0.930
AAH73657 Xenopus laevis AAH73657 I 0.930
AAR26262 Xenopus laevis AAR26262 I 0.930
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.930
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.831
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.704
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.900
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.757
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.873
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.718
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.800
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.817
e_gwh2.2.847.1 Phanerochaete chrysosporium e_gwh2.2.847.1 I 0.729
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.775
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.817
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.817
Q9DDY9 Xenopus laevis Q9DDY9 I 0.930
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.915
Bm1_48895 Brugia malayi Bm1_48895 I 0.900
CBN16301 Caenorhabditis brenneri CBN16301 I 0.704
CJA15148 Caenorhabditis japonica CJA15148 I 0.718
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.789
CRE07990 Caenorhabditis remanei CRE07990 I 0.718
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.915
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.761
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.915
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.915
CBN10290 Caenorhabditis brenneri CBN10290 I 0.718
CBN00953 Caenorhabditis brenneri CBN00953 I 0.718
CBG03741 Caenorhabditis briggsae CBG03741 I 0.718
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.789
LOAG_03634 Loa loa LOAG_03634 I 0.900
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.900
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.845
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.817
AAEL015143 Aedes aegypti AAEL015143 I 0.789
AGAP005117 Anopheles gambiae AGAP005117 I 0.789
pabp-2 Caenorhabditis elegans C17E4.5 I 0.704
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.915
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.771
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.915
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.761
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.915
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.761
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.901
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.915
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.930
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.732
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.859
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.915
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.887
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.915
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.915
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.757
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.915
LOC100055599 Equus caballus ENSECAG00000011652 I 0.915
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.743
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.873
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.986
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.915
estExt_fgenesh3_pg.C_140127 Postia placenta estExt_fgenesh3_pg.C_140127 N 0.000
gww1.2.642.1 Laccaria bicolor gww1.2.642.1 N 0.000
PGTG_01300 Puccinia graminis PGTG_01300 N 0.718
PTTG_05043 Puccinia triticina PTTG_05043 N 0.718
UM02401 Ustilago maydis UM02401 N 0.732
estExt_fgenesh2_pm.C_40328 Serpula lacrymans estExt_fgenesh2_pm.C_40328 N 0.000
e_gw1.4.778.1 Heterobasidion annosum e_gw1.4.778.1 N 0.000
EDP44971.1 Malassezia globosa EDP44971.1 N 0.718