D4A8U2_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000007252 T41053_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.793
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.793
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.793
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.779
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000009539 RRM 15 84
ENSRNOP00000009539 RRM 106 174
ENSRNOP00000061392 RRM 15 84
ENSRNOP00000061392 RRM 106 173

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CHGG_00532 Chaetomium globosum CHGG_00532 N 0.000
genemark.2690_g Thielavia terrestris genemark.2690_g N 0.000
estExt_Genewise1Plus.C_90498 Neurospora tetrasperma estExt_Genewise1Plus.C_90498 N 0.000
estExt_Genewise1Plus.C_11025 Neurospora discreta estExt_Genewise1Plus.C_11025 N 0.000
estExt_Genewise1.C_90896 Trichoderma virens estExt_Genewise1.C_90896 N 0.000
estExt_Genewise1.C_33759 Myceliophthora thermophila estExt_Genewise1.C_33759 N 0.000
e_gw1.5.1025.1 Nectria haematococca e_gw1.5.1025.1 N 0.000
e_gw1.4.4.1 Trichoderma reesei e_gw1.4.4.1 N 0.000
e_gw1.1.40.1 Trichoderma atroviride e_gw1.1.40.1 N 0.000
NCU04611 Neurospora crassa NCU04611 N 0.000
FVEG_02619 Fusarium verticillioides FVEG_02619 N 0.000
FGSG_09904 Fusarium graminearum FGSG_09904 N 0.000
Pa_2_830 Podospora anserina Pa_2_830 N 0.000