XM_002865910.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.8__1206__AT5G53180.1 T44596_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__1206__AT5G53180.1 RRM 20 78
fgenesh2_kg.8__1206__AT5G53180.1 RRM 124 181
fgenesh2_kg.8__1206__AT5G53180.1 RRM 249 311

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.771
ppa005791m Prunus persica ppa005791m I 0.933
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.761
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.939
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.917
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.751
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.939
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.933
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.775
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.928
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.771
mgf001230m Mimulus guttatus mgf001230m I 0.836
ppa004961m Prunus persica ppa004961m I 0.762
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.803
MDP0000796160 Malus x domestica MDP0000796160 I 0.746
MDP0000269393 Malus x domestica MDP0000269393 I 0.894
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.766
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.917
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.763
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.777
mgf005649m Mimulus guttatus mgf005649m I 0.879
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.922
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.922
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.739
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.762
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.922
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.778
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.755
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.757
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.734
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.961
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.758
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.774
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.772
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.772
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.911
30169.m006527 Ricinus communis 30169.m006527 I 0.939
28649.m000223 Ricinus communis 28649.m000223 I 0.771
PK14390.1 Cannabis sativa PK14390.1 I 0.757
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.773
SB07G021250 Sorghum bicolor Sb07g021250 I 0.763
SB03G028150 Sorghum bicolor Sb03g028150 I 0.775
SB01G034060 Sorghum bicolor Sb01g034060 I 0.714
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.735
MDP0000274672 Malus x domestica MDP0000274672 N 0.778
MDP0000236223 Malus x domestica MDP0000236223 N 0.806