cassava7388.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava7388.valid.m1 T49467_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava7388.valid.m1 RRM 8 76
cassava7388.valid.m1 RRM 112 181

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005979m Prunus persica ppa005979m N 0.827
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.820
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.712
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.827
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.705
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.705
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.863
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.820
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.712
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.719
mgf023368m Mimulus guttatus mgf023368m N 0.723
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.806
ppa005309m Prunus persica ppa005309m N 0.871
MDP0000320861 Malus x domestica MDP0000320861 N 0.806
MDP0000286430 Malus x domestica MDP0000286430 N 0.777
MDP0000217366 Malus x domestica MDP0000217366 N 0.849
MDP0000173934 Malus x domestica MDP0000173934 N 0.842
MDP0000130865 Malus x domestica MDP0000130865 N 0.791
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.806
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.806
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.835
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.835
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.856
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.712
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.759
XM_002879403.1 Arabidopsis lyrata fgenesh2_kg.4__1344__AT2G33410.1 N 0.716
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.741
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.719
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.759
AT2G33410 Arabidopsis thaliana AT2G33410-TAIR-G N 0.716
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.878
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.784
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.784
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.835
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.835
30008.m000830 Ricinus communis 30008.m000830 N 0.914
27613.m000635 Ricinus communis 27613.m000635 N 0.719
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.806
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.784
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.863
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.885
PK00513.1 Cannabis sativa PK00513.1 N 0.849