XM_002862650.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.8__1457__AT5G55550.1 T44598_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__1457__AT5G55550.1 RRM 8 76
fgenesh2_kg.8__1457__AT5G55550.1 RRM 113 182

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.993
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.892
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.892
PK25912.1 Cannabis sativa PK25912.1 N 0.856
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.856
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.842
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.842
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.842
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.842
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.836
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.835
ppa004834m Prunus persica ppa004834m N 0.835
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.835
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.835
ppa005122m Prunus persica ppa005122m N 0.835
MDP0000204698 Malus x domestica MDP0000204698 N 0.827
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.827
27613.m000635 Ricinus communis 27613.m000635 N 0.827
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.827
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.827
MDP0000609551 Malus x domestica MDP0000609551 N 0.820
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.820
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.820
MDP0000188788 Malus x domestica MDP0000188788 N 0.820
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.814
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.806
mgf012147m Mimulus guttatus mgf012147m N 0.806
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.806
30048.m000319 Ricinus communis 30048.m000319 N 0.806
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.806
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.801
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.800
mgf009385m Mimulus guttatus mgf009385m N 0.799
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.799
PK13457.1 Cannabis sativa PK13457.1 N 0.799
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.799
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.799
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.799
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.799
ppa005119m Prunus persica ppa005119m N 0.791
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.791
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.791
ppa005132m Prunus persica ppa005132m N 0.791
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.791
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.784
MDP0000320618 Malus x domestica MDP0000320618 N 0.784
MDP0000907782 Malus x domestica MDP0000907782 N 0.784
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.784
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.777
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.777
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.777
MDP0000642684 Malus x domestica MDP0000642684 N 0.777
mgf004139m Mimulus guttatus mgf004139m N 0.777
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.777
29608.m000212 Ricinus communis 29608.m000212 N 0.777
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.777
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.770
SB02G005670 Sorghum bicolor Sb02g005670 N 0.770
SB02G005620 Sorghum bicolor Sb02g005620 N 0.770
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.763
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.763
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.763
mgf009486m Mimulus guttatus mgf009486m N 0.757
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.755
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.755
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.755
SB02G037690 Sorghum bicolor Sb02g037690 N 0.755
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.755
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.748
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.727
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.719
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.712
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.705
SB05G025410 Sorghum bicolor Sb05g025410 N 0.705