Glyma02g46650.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma02g46650.1 T52613_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma02g46650.1 RRM 8 76
Glyma02g46650.1 RRM 108 177

Links

Other RRM family RBPs
Other Glycine max RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.993
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.964
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.957
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.943
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.935
PK25912.1 Cannabis sativa PK25912.1 N 0.928
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.921
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.921
ppa004834m Prunus persica ppa004834m N 0.914
ppa005122m Prunus persica ppa005122m N 0.914
MDP0000204698 Malus x domestica MDP0000204698 N 0.906
MDP0000188788 Malus x domestica MDP0000188788 N 0.906
MDP0000609551 Malus x domestica MDP0000609551 N 0.906
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.899
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.899
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.892
27613.m000635 Ricinus communis 27613.m000635 N 0.892
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.885
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.885
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.885
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.871
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.863
ppa005119m Prunus persica ppa005119m N 0.863
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.863
ppa005132m Prunus persica ppa005132m N 0.863
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.863
mgf009385m Mimulus guttatus mgf009385m N 0.863
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.856
MDP0000320618 Malus x domestica MDP0000320618 N 0.856
30048.m000319 Ricinus communis 30048.m000319 N 0.856
29608.m000212 Ricinus communis 29608.m000212 N 0.856
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.856
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.856
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.849
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.849
mgf012147m Mimulus guttatus mgf012147m N 0.849
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.849
MDP0000907782 Malus x domestica MDP0000907782 N 0.849
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.842
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.842
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.842
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.842
MDP0000642684 Malus x domestica MDP0000642684 N 0.842
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.842
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.842
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.836
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.835
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.835
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.835
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.830
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.829
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.827
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.827
PK13457.1 Cannabis sativa PK13457.1 N 0.813
mgf004139m Mimulus guttatus mgf004139m N 0.806
SB02G005620 Sorghum bicolor Sb02g005620 N 0.799
SB02G005670 Sorghum bicolor Sb02g005670 N 0.799
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
mgf009486m Mimulus guttatus mgf009486m N 0.793
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.791
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.791
SB02G037690 Sorghum bicolor Sb02g037690 N 0.791
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.784
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.784
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.777
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.777
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.777
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.770
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.770
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.770
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.763
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.727
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.723
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.719
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.719
SB05G025410 Sorghum bicolor Sb05g025410 N 0.712
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.705
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.705