estExt_Genewise1.C_1960042 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_1960042 T51217_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_1960042 RRM 73 140
estExt_Genewise1.C_1960042 RRM 170 238

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009298m Prunus persica ppa009298m N 0.818
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.934
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.934
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.796
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.803
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.869
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.869
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.861
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.883
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 1.000
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.839
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.717
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.752
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.905
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.847
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.847
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.847
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.847
mgf005336m Mimulus guttatus mgf005336m N 0.737
mgf012896m Mimulus guttatus mgf012896m N 0.912
mgf013366m Mimulus guttatus mgf013366m N 0.891
ppa006808m Prunus persica ppa006808m N 0.905
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.774
MDP0000233630 Malus x domestica MDP0000233630 N 0.876
MDP0000223003 Malus x domestica MDP0000223003 N 0.708
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.723
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.715
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.774
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.839
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.861
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.803
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.898
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.715
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.745
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.883
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.752
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.723
mgf014445m Mimulus guttatus mgf014445m N 0.752
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.847
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.847
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.847
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.796
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.847
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.891
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.766
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.774
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.766
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.912
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.730
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.759
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.839
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.788
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.788
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.781
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.847
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.788
PK28889.1 Cannabis sativa PK28889.1 N 0.818
PK12463.1 Cannabis sativa PK12463.1 N 0.927
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.788
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.861
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.825
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.818
30068.m002593 Ricinus communis 30068.m002593 N 0.905
29650.m000268 Ricinus communis 29650.m000268 N 0.788
29485.m000140 Ricinus communis 29485.m000140 N 0.854
SB10G021290 Sorghum bicolor Sb10g021290 N 0.730
SB07G001560 Sorghum bicolor Sb07g001560 N 0.898
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.745
SB03G002180 Sorghum bicolor Sb03g002180 N 0.752
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.745
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.730
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.752
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.912
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.745
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.759
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.781
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.942
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.949
PK04894.1 Cannabis sativa PK04894.1 N 0.905