estExt_Genewise1.C_sca_180152 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_sca_180152 T51324_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_sca_180152 RRM 43 113

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.817
GH15101 Drosophila grimshawi FBgn0122576 N 0.775
GI23717 Drosophila mojavensis FBgn0146442 N 0.775
GL12592 Drosophila persimilis FBgn0150198 N 0.775
GM15280 Drosophila sechellia FBgn0170200 N 0.789
GD19204 Drosophila simulans FBgn0190709 N 0.789
GJ18756 Drosophila virilis FBgn0205908 N 0.761
GJ23276 Drosophila virilis FBgn0210378 N 0.775
GK11244 Drosophila willistoni FBgn0213255 N 0.775
GE25514 Drosophila yakuba FBgn0242580 N 0.775
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.831
PHUM535920 Pediculus humanus PHUM535920 N 0.803
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.761
SB04G025800 Sorghum bicolor Sb04g025800 N 0.718
GG22670 Drosophila erecta FBgn0114835 N 0.789
GF16759 Drosophila ananassae FBgn0093780 N 0.775
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.746
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.831
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.817
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.803
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.831
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.803
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.803
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.817
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.817
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.789
ncbp-2 Caenorhabditis elegans F26A3.2 N 0.704
Cbp20 Drosophila melanogaster FBgn0022943 N 0.789
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.775
SNAPOd2T00014922001 Oikopleura dioica SNAPOd2T00014922001 N 0.718
91084 Helobdella robusta 91084 N 0.789
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.704
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.718
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.718
Minc02990 Meloidogyne incognita Minc02990 N 0.732
Minc06129 Meloidogyne incognita Minc06129 N 0.732
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.718
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.732
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.789
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.803
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.732
2118330B Xenopus laevis 2118330B N 0.789
AAH72902 Xenopus laevis AAH72902 N 0.803
CAA59259 Xenopus laevis CAA59259 N 0.789
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.817
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.817
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.746
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.704
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.704
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.704
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.761
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.803
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.789
gw1.14.317.1 Chlorella NC64A gw1.14.317.1 N 0.732
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.704
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.775
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.775
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.718
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.746
P52299 Xenopus laevis P52299 N 0.803
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.817
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.704
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.761
CRE20447 Caenorhabditis remanei CRE20447 N 0.704
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.775
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.817
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.817
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.718
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.803
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.775
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.775
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.817
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.803
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.746
ncbp2 Danio rerio ENSDARG00000014898 N 0.789
CBN14593 Caenorhabditis brenneri CBN14593 N 0.704
CBG22194 Caenorhabditis briggsae CBG22194 N 0.704
Bm1_02935 Brugia malayi Bm1_02935 N 0.761
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.761
LOAG_03270 Loa loa LOAG_03270 N 0.775
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.775
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.803
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.746
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.746
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.746
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.803
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.775
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.817
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.704
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.704
NCBP2L Equus caballus ENSECAG00000003478 N 0.732
NCBP2 Equus caballus ENSECAG00000016153 N 0.817
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.803
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.803
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.817
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.831
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.817
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.817
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.817
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.803
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.803
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.817
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.817
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.803
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.817
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.831
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.803
NCBP2 Homo sapiens ENSG00000114503 N 0.817
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.746
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.789
NCBP2 Gallus gallus ENSGALG00000006843 N 0.817
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.817
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.746
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.817
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.831
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.789
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.817
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.817
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.817
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.817
NCBP2 Sorex araneus ENSSARG00000014294 N 0.732