CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.0.1780.1
(
Selaginella moellendorfii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.0.1780.1
T53029_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.708
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.708
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.0.1780.1
RRM
65
136
LFCGDLGNEVNDEVLTKAFTRFPSFNMARVVRDKRTGKTKGYGFVSFSSAADLAFAMKEMNGKFYVGNRPIK
Links
Other
RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM42
Homo sapiens
ENSG00000126254
D
0.708
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.000
CG2931
Drosophila melanogaster
FBgn0037342
D
0.708
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.806
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.819
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.000
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.861
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.764
GA15528-RA
Drosophila pseudoobscura
FBgn0075545
I
0.000
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.000
29680.m001693
Ricinus communis
29680.m001693
I
0.847
76581
Helobdella robusta
76581
I
0.000
Aqu1.218430
Amphimedon queenslandica
Aqu1.218430
I
0.000
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.861
PHUM106890
Pediculus humanus
PHUM106890
I
0.000
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.861
GF11626
Drosophila ananassae
FBgn0088666
I
0.708
GH22277
Drosophila grimshawi
FBgn0129737
I
0.000
GL22151
Drosophila persimilis
FBgn0159743
I
0.000
GM10617
Drosophila sechellia
FBgn0165563
I
0.708
GJ22705
Drosophila virilis
FBgn0209809
I
0.000
GK12952
Drosophila willistoni
FBgn0214961
I
0.000
GE24162
Drosophila yakuba
FBgn0241294
I
0.708
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.847
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.833
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.833
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.792
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.861
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.000
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.861
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.708
LjSGA_021949.1
Lotus japonicus
LjSGA_021949.1
I
0.819
MDP0000283678
Malus x domestica
MDP0000283678
I
0.833
MDP0000320908
Malus x domestica
MDP0000320908
I
0.833
Minc13155
Meloidogyne incognita
Minc13155
I
0.000
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.819
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.819
ppa010477m
Prunus persica
ppa010477m
I
0.833
XP_002167334.1
Hydra magnipapillata
XP_002167334.1
I
0.000
A2VDB3
Xenopus laevis
A2VDB3
I
0.000
AAI29577
Xenopus laevis
AAI29577
I
0.000
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.861
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.778
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.861
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.000
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.000
e_gw.92.129.1
Nematostella vectensis
e_gw.92.129.1
I
0.000
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.000
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.000
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.847
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.833
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.833
mgf018525m
Mimulus guttatus
mgf018525m
I
0.736
mgf021739m
Mimulus guttatus
mgf021739m
I
0.847
AAI29698
Xenopus laevis
AAI29698
I
0.000
Bm1_40380
Brugia malayi
Bm1_40380
I
0.000
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.000
CJA09414
Caenorhabditis japonica
CJA09414
I
0.000
CRE29329
Caenorhabditis remanei
CRE29329
I
0.000
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.000
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.708
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.708
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.000
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.708
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.708
rbm42
Danio rerio
ENSDARG00000039910
I
0.000
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.708
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.000
BRADI3G49130
Brachypodium distachyon
BRADI3G49130
I
0.819
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.847
LOAG_04208
Loa loa
LOAG_04208
I
0.000
PTSG_04228
Salpingoeca rosetta
PTSG_04228
I
0.000
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.708
WUBG_05387
Wuchereria bancrofti
WUBG_05387
I
0.000
PK16312.1
Cannabis sativa
PK16312.1
I
0.833
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.000
AAEL010642
Aedes aegypti
AAEL010642
I
0.000
AGAP010200
Anopheles gambiae
AGAP010200
I
0.000
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.819
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.806
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.861
RBM42
Echinops telfairi
ENSETEG00000007878
I
0.000
RBM42
Felis catus
ENSFCAG00000006376
I
0.000
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.708
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.708
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.708
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.708
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.708
RBM42
Sorex araneus
ENSSARG00000010724
I
0.708
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.708
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.708
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.708
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.708
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.708
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.708
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.708
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.708
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.708
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.708
ENSMEUG00000003054
Macropus eugenii
ENSMEUG00000003054
I
0.000
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.708
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.708
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.708
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.708
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.708
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.708
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.708
RBM42
Loxodonta africana
ENSLAFG00000014993
N
0.000
SNAPOd2T00026674001
Oikopleura dioica
SNAPOd2T00026674001
N
0.000