gw1.0.1780.1 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.0.1780.1 T53029_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.708
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.0.1780.1 RRM 65 136

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CG2931 Drosophila melanogaster FBgn0037342 D 0.708
RBM42 Homo sapiens ENSG00000126254 D 0.708
ppa010477m Prunus persica ppa010477m I 0.833
29680.m001693 Ricinus communis 29680.m001693 I 0.847
SB04G026430 Sorghum bicolor Sb04g026430 I 0.764
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.861
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.819
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.806
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.861
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.792
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.833
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.833
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.847
GE24162 Drosophila yakuba FBgn0241294 I 0.708
GM10617 Drosophila sechellia FBgn0165563 I 0.708
GI23084 Drosophila mojavensis FBgn0145811 I 0.708
GF11626 Drosophila ananassae FBgn0088666 I 0.708
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.861
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.861
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.861
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.819
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.819
MDP0000320908 Malus x domestica MDP0000320908 I 0.833
MDP0000283678 Malus x domestica MDP0000283678 I 0.833
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.819
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.708
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.861
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.778
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.861
mgf021739m Mimulus guttatus mgf021739m I 0.847
mgf018525m Mimulus guttatus mgf018525m I 0.736
mgf008981m Mimulus guttatus mgf008981m I 0.712
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.833
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.833
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.847
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.708
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.708
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.861
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.708
RBM42 Microcebus murinus ENSMICG00000009880 I 0.708
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.708
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.708
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.708
LOC100051102 Equus caballus ENSECAG00000018215 I 0.708
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.708
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.708
RBM42 Canis familiaris ENSCAFG00000006925 I 0.708
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.708
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.819
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.847
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.806
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.819
PK16312.1 Cannabis sativa PK16312.1 I 0.833
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.708
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.708
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.708
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.708
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.708
RBM42 Sus scrofa ENSSSCG00000002905 I 0.708
RBM42 Sorex araneus ENSSARG00000010724 I 0.708
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.708
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.708
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.708
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.708
RBM42 Procavia capensis ENSPCAG00000013053 I 0.708
RBM42 Oryzias latipes ENSORLG00000003387 I 0.708
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.708
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.708
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.708
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.708
Rbm42 Mus musculus ENSMUSG00000036733 I 0.708
PDK_20s1329112g001 Phoenix dactylifera PDK_20s1329112g001 N 0.792
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.708
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.736
chr5.LjT18P14.100.nd Lotus japonicus chr5.LjT18P14.100.nd N 0.722
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.708
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.708