gw1.0.1780.1 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.0.1780.1 T53029_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.708
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.0.1780.1 RRM 65 136

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM42 Homo sapiens ENSG00000126254 D 0.708
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.000
CG2931 Drosophila melanogaster FBgn0037342 D 0.708
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.806
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.819
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.000
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.861
SB04G026430 Sorghum bicolor Sb04g026430 I 0.764
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.000
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.000
29680.m001693 Ricinus communis 29680.m001693 I 0.847
76581 Helobdella robusta 76581 I 0.000
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.000
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.861
PHUM106890 Pediculus humanus PHUM106890 I 0.000
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.861
GF11626 Drosophila ananassae FBgn0088666 I 0.708
GH22277 Drosophila grimshawi FBgn0129737 I 0.000
GL22151 Drosophila persimilis FBgn0159743 I 0.000
GM10617 Drosophila sechellia FBgn0165563 I 0.708
GJ22705 Drosophila virilis FBgn0209809 I 0.000
GK12952 Drosophila willistoni FBgn0214961 I 0.000
GE24162 Drosophila yakuba FBgn0241294 I 0.708
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.847
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.833
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.833
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.792
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.861
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.000
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.861
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.708
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.819
MDP0000283678 Malus x domestica MDP0000283678 I 0.833
MDP0000320908 Malus x domestica MDP0000320908 I 0.833
Minc13155 Meloidogyne incognita Minc13155 I 0.000
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.819
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.819
ppa010477m Prunus persica ppa010477m I 0.833
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.000
A2VDB3 Xenopus laevis A2VDB3 I 0.000
AAI29577 Xenopus laevis AAI29577 I 0.000
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.861
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.778
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.861
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.000
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.000
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.000
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.000
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.000
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.847
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.833
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.833
mgf018525m Mimulus guttatus mgf018525m I 0.736
mgf021739m Mimulus guttatus mgf021739m I 0.847
AAI29698 Xenopus laevis AAI29698 I 0.000
Bm1_40380 Brugia malayi Bm1_40380 I 0.000
CBN12017 Caenorhabditis brenneri CBN12017 I 0.000
CJA09414 Caenorhabditis japonica CJA09414 I 0.000
CRE29329 Caenorhabditis remanei CRE29329 I 0.000
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.000
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.708
RBM42 Canis familiaris ENSCAFG00000006925 I 0.708
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.000
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.708
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.708
rbm42 Danio rerio ENSDARG00000039910 I 0.000
LOC100051102 Equus caballus ENSECAG00000018215 I 0.708
CBG21313 Caenorhabditis briggsae CBG21313 I 0.000
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.819
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.847
LOAG_04208 Loa loa LOAG_04208 I 0.000
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.000
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.708
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.000
PK16312.1 Cannabis sativa PK16312.1 I 0.833
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.000
AAEL010642 Aedes aegypti AAEL010642 I 0.000
AGAP010200 Anopheles gambiae AGAP010200 I 0.000
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.819
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.806
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.861
RBM42 Echinops telfairi ENSETEG00000007878 I 0.000
RBM42 Felis catus ENSFCAG00000006376 I 0.000
RBM42 Procavia capensis ENSPCAG00000013053 I 0.708
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.708
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.708
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.708
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.708
RBM42 Sorex araneus ENSSARG00000010724 I 0.708
RBM42 Sus scrofa ENSSSCG00000002905 I 0.708
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.708
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.708
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.708
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.708
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.708
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.708
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.708
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.708
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.708
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.000
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.708
RBM42 Oryzias latipes ENSORLG00000003387 I 0.708
RBM42 Microcebus murinus ENSMICG00000009880 I 0.708
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.708
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.708
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.708
Rbm42 Mus musculus ENSMUSG00000036733 I 0.708
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.000
SNAPOd2T00026674001 Oikopleura dioica SNAPOd2T00026674001 N 0.000