XP_002154000.1 (Hydra magnipapillata)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 XP_002154000.1 T17402_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.873
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.873
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.819
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.819
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.819
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_002154000.1 CSD 446 516

Links

Other CSD family RBPs
Other Hydra magnipapillata RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
133388 Helobdella robusta 133388 I 0.718
146547 Helobdella robusta 146547 I 0.704
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.819
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.861
AAA49715 Xenopus laevis AAA49715 I 0.861
AAA49716 Xenopus laevis AAA49716 I 0.833
AAA49924 Xenopus laevis AAA49924 I 0.819
AAEL001375 Aedes aegypti AAEL001375 I 0.746
AAH41191 Xenopus laevis AAH41191 I 0.861
AAH42217 Xenopus laevis AAH42217 I 0.861
AAI06324 Xenopus laevis AAI06324 I 0.861
AAI30161 Xenopus laevis AAI30161 I 0.861
AAI55914 Xenopus laevis AAI55914 I 0.819
AAI55915 Xenopus laevis AAI55915 I 0.833
AAI69704 Xenopus laevis AAI69704 I 0.833
AGAP006108 Anopheles gambiae AGAP006108 I 0.746
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.803
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.803
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.803
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.761
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.746
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.761
Bm1_57515 Brugia malayi Bm1_57515 I 0.775
CAA42778 Xenopus laevis CAA42778 I 0.861
CBG02981 Caenorhabditis briggsae CBG02981 I 0.746
CBN16711 Caenorhabditis brenneri CBN16711 I 0.761
cey-1 Caenorhabditis elegans F33A8.3 I 0.746
CJA05984 Caenorhabditis japonica CJA05984 I 0.732
CRE01789 Caenorhabditis remanei CRE01789 I 0.761
CSDA Loxodonta africana ENSLAFG00000017247 I 0.861
CSDA Vicugna pacos ENSVPAG00000000876 I 0.750
CSDA Microcebus murinus ENSMICG00000004602 I 0.750
CSDA Homo sapiens ENSG00000060138 I 0.861
CSDA Echinops telfairi ENSETEG00000002557 I 0.861
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.861
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.861
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.861
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.861
Csda Rattus norvegicus ENSRNOG00000005480 I 0.861
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.861
CSDA Pan troglodytes ENSPTRG00000004681 I 0.861
CSDA Sus scrofa ENSSSCG00000000633 I 0.861
CSDA Procavia capensis ENSPCAG00000001397 I 0.792
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.746
Csda Mus musculus ENSMUSG00000030189 I 0.861
CSDA Monodelphis domestica ENSMODG00000018248 I 0.847
CSDA Macaca mulatta ENSMMUG00000022469 I 0.861
csda Xenopus tropicalis ENSXETG00000016239 I 0.833
CSDA Cavia porcellus ENSCPOG00000011329 I 0.861
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.861
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.861
Csda Dipodomys ordii ENSDORG00000009103 I 0.861
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.789
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.847
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.806
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.861
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.753
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.761
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.775
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.718
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.775
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.847
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.718
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.789
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.761
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.806
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.803
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.792
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.861
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.778
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.861
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.847
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.861
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.819
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.792
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.861
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.833
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.761
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.833
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.861
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.847
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.833
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.861
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.861
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.847
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.847
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.789
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.806
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.761
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.861
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.778
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.778
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.775
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.859
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.819
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.775
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.775
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.775
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.761
GD12750 Drosophila simulans FBgn0184477 I 0.761
GE20150 Drosophila yakuba FBgn0237472 I 0.761
GF10852 Drosophila ananassae FBgn0087892 I 0.761
GH16919 Drosophila grimshawi FBgn0124390 I 0.761
GI13673 Drosophila mojavensis FBgn0136428 I 0.761
GJ14010 Drosophila virilis FBgn0201228 I 0.761
GK16710 Drosophila willistoni FBgn0218712 I 0.761
GL15684 Drosophila persimilis FBgn0153288 I 0.761
GM24682 Drosophila sechellia FBgn0179545 I 0.761
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.718
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.746
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.803
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.775
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.775
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.775
ISCW005281 Ixodes scapularis ISCW005281 I 0.761
LOC100065107 Equus caballus ENSECAG00000013777 I 0.861
LOC100067336 Equus caballus ENSECAG00000023592 I 0.861
LOC100072964 Equus caballus ENSECAG00000009996 I 0.819
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.861
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.861
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.819
Minc12652 Meloidogyne incognita Minc12652 I 0.704
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.000
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.761
P21573 Xenopus laevis P21573 I 0.861
P21574 Xenopus laevis P21574 I 0.833
P45441 Xenopus laevis P45441 I 0.819
PHUM156710 Pediculus humanus PHUM156710 I 0.789
PHUM156720 Pediculus humanus PHUM156720 I 0.789
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.761
Q00436 Xenopus laevis Q00436 I 0.861
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.861
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.792
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.861
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.861
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.817
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.775
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.775
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.803
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 1.000
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.847
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.861
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.819
YB-1 Homo sapiens ENSG00000065978 D 0.861
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.861
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.861
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.861
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.819
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.861
ybx1 Danio rerio ENSDARG00000004757 I 0.861
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.861
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.861
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.861
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.761
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.861
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.861
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.861
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.861
Ybx1 Mus musculus ENSMUSG00000028639 I 0.861
YBX1 Microcebus murinus ENSMICG00000014984 I 0.861
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.861
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.861
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.746
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.819
Ybx2 Mus musculus ENSMUSG00000018554 I 0.819
YBX2 Canis familiaris ENSCAFG00000016128 I 0.819
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.819
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.806
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.819
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.819
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.819
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.819
YBX2 Procavia capensis ENSPCAG00000008019 I 0.819
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.819
YBX2 Sorex araneus ENSSARG00000000488 I 0.806
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.789
YBX2 Sus scrofa ENSSSCG00000017938 I 0.819
YBX2 Homo sapiens ENSG00000006047 D 0.819
ybx2-a Xenopus laevis AAI69706 D 0.833
yps Drosophila melanogaster FBgn0022959 I 0.761