CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP1
(
Anolis carolinensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSACAG00000006310
T18407_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.763
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.763
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.763
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.763
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000006309
KH
100
162
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPERSCMLTGTPESVQSAKRLL
ENSACAP00000006309
KH
185
249
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSACAP00000006309
KH
275
337
GLDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEII
ENSACAP00000006309
KH
376
441
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
Links
Other
KH
family RBPs
Other
Anolis carolinensis
RBPs
107 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.787
AAH44277
Xenopus laevis
AAH44277
I
0.918
AAH60400
Xenopus laevis
AAH60400
N
0.787
AAH70981
Xenopus laevis
AAH70981
I
0.926
AAI61696
Xenopus laevis
AAI61696
I
0.751
AAI69815
Xenopus laevis
AAI69815
I
0.926
AAI69923
Xenopus laevis
AAI69923
I
0.747
AAN77160
Xenopus laevis
AAN77160
I
0.747
AAN77161
Xenopus laevis
AAN77161
I
0.899
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.791
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.988
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.763
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.756
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.869
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.872
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.988
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.763
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.791
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.992
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.992
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.872
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.888
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.981
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.992
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.988
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.817
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.837
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.992
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.988
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.992
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.988
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.992
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.923
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.992
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.988
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.981
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.992
FUBP1
Equus caballus
ENSECAG00000010867
I
0.992
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.992
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.942
fubp1
Danio rerio
ENSDARG00000029248
I
0.860
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.988
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.992
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.992
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.992
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.992
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.966
FUBP1
Homo sapiens
ENSG00000162613
I
0.988
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.984
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.721
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.729
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.783
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.767
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.764
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.787
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.767
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.733
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.756
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.787
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.795
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.791
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.795
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.740
FUBP3
Felis catus
ENSFCAG00000005113
N
0.783
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.791
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.787
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.775
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.787
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.795
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.752
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.791
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.791
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.787
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.775
FUBP3
Homo sapiens
ENSG00000107164
N
0.791
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.787
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.783
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.763
KHSRP
Felis catus
ENSFCAG00000003731
I
0.763
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.763
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.759
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.763
KHSRP
Danio rerio
ENSDARG00000026489
I
0.732
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.763
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.763
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.763
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.763
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.724
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.759
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.704
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.712
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.763
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.763
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.763
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.759
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.720
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.763
KHSRP
Homo sapiens
ENSG00000088247
D
0.763
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.763
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.763
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.763
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.764
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.795
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.763
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.992
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.981
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.787