GSVIVG00031557001 (Vitis vinifera)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 GSVIVG00031557001 T24375_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00031557001 PUF 690 724
GSVIVT00031557001 PUF 726 760
GSVIVT00031557001 PUF 762 796
GSVIVT00031557001 PUF 798 832
GSVIVT00031557001 PUF 834 868
GSVIVT00031557001 PUF 871 905
GSVIVT00031557001 PUF 907 941
GSVIVT00031557001 PUF 950 983

Links

Other PUF family RBPs
Other Vitis vinifera RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006300 Ricinus communis 30169.m006300 N 0.784
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.723
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.708
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.794
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.763
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.710
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.854
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.791
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.798
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.708
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.709
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.707
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.733
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.836
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.808
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.826
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.756
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.727
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.801
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.739
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.763
MDP0000265231 Malus x domestica MDP0000265231 N 0.858
MDP0000277305 Malus x domestica MDP0000277305 N 0.809
MDP0000313902 Malus x domestica MDP0000313902 N 0.777
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.808
mgf002285m Mimulus guttatus mgf002285m N 0.779
mgf006786m Mimulus guttatus mgf006786m N 0.784
PK11972.1 Cannabis sativa PK11972.1 N 0.744
PK12245.1 Cannabis sativa PK12245.1 N 0.843
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.819
ppa000898m Prunus persica ppa000898m N 0.869
ppa016404m Prunus persica ppa016404m N 0.805
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.746
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.701