RBM42 (Microcebus murinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMICG00000009880 T38541_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		1.000
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000009000 RRM 380 450

Links

Other RRM family RBPs
Other Microcebus murinus RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30054.m000804 Ricinus communis 30054.m000804 N 0.000
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.000
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.000
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.000
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.000
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.000
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.000
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.000
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.000
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.000
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.000
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.000
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.000
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.000
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.000
MDP0000209929 Malus x domestica MDP0000209929 N 0.000
MDP0000706016 Malus x domestica MDP0000706016 N 0.000
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.000
mgf003951m Mimulus guttatus mgf003951m N 0.000
mgf004101m Mimulus guttatus mgf004101m N 0.000
mgf012162m Mimulus guttatus mgf012162m N 0.000
PK04103.1 Cannabis sativa PK04103.1 N 0.000
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.000