ENSRNOG00000030250 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000030250 T41205_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.782
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.782
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.782
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000046124 RRM 39 104
ENSRNOP00000046124 RRM 130 200

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49949 Xenopus laevis AAA49949 I 0.740
AAA49950 Xenopus laevis AAA49950 I 0.753
AAI69881 Xenopus laevis AAI69881 I 0.753
Ame_R010934 Ailuropoda melanoleuca Ame_R010934 N 0.715
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.700
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.703
CBF67578 Xenopus laevis CBF67578 I 0.753
CBU92451 Xenopus laevis CBU92451 I 0.753
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.750
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.803
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.775
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.735
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.753
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.725
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.760
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.718
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.796
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.734
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.707
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.768
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.729
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.761
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.707
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.747
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.700
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.700
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.775
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.700
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.711
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.771
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.700
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.700
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.713
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.733
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.707
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.700
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.703
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.700
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.768
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.701
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.780
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.766
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.700
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.700
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.700
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.748
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.817
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.742
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.700
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.732
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.700
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.727
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.774
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.761
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.796
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.824
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.794
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.700
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.709
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.700
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.700
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.770
Gm8991 Mus musculus ENSMUSG00000059179 I 0.767
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.700
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.700
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.700
HNRNPA1 Homo sapiens ENSG00000135486 D 0.700
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.700
HNRNPA3 Echinops telfairi ENSETEG00000007747 N 0.705
HNRNPA3 Homo sapiens ENSG00000170144 I 0.768
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.745
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.713
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.768
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.768
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.767
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.780
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.768
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.740
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.768
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.773
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.768
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.718
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.768
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.768
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.768
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.768
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.768
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.762
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.768
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.767
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.786
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.767
LOC100066794 Equus caballus ENSECAG00000023237 I 0.780
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.768
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.700
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.700
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.768
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.700
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.707
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.700
LOC781499 Bos taurus ENSBTAG00000021580 I 0.768
P51968 Xenopus laevis P51968 I 0.740
P51992 Xenopus laevis P51992 I 0.753
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.700
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.700
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.700
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.700
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.700
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.768
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.700